Experiment: R2A with Apigenin 50 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03215 and ABZR88_RS03220 are separated by 20 nucleotides ABZR88_RS03220 and ABZR88_RS03225 are separated by 251 nucleotides
ABZR88_RS03215: ABZR88_RS03215 - TonB-dependent receptor, at 776,546 to 779,836
_RS03215
ABZR88_RS03220: ABZR88_RS03220 - RagB/SusD family nutrient uptake outer membrane protein, at 779,857 to 781,722
_RS03220
ABZR88_RS03225: ABZR88_RS03225 - hypothetical protein, at 781,974 to 783,071
_RS03225
Position (kb) 779
780
781
782 Strain fitness (log2 ratio) -1
0
1 at 778.901 kb on - strand, within ABZR88_RS03215 at 779.023 kb on - strand, within ABZR88_RS03215 at 779.269 kb on + strand, within ABZR88_RS03215 at 779.402 kb on + strand, within ABZR88_RS03215 at 779.507 kb on + strand, within ABZR88_RS03215 at 779.580 kb on - strand at 779.811 kb on + strand at 779.877 kb on + strand at 779.997 kb on + strand at 780.051 kb on - strand, within ABZR88_RS03220 at 780.192 kb on + strand, within ABZR88_RS03220 at 780.214 kb on - strand, within ABZR88_RS03220 at 780.217 kb on + strand, within ABZR88_RS03220 at 780.241 kb on + strand, within ABZR88_RS03220 at 780.482 kb on + strand, within ABZR88_RS03220 at 780.557 kb on - strand, within ABZR88_RS03220 at 780.688 kb on - strand, within ABZR88_RS03220 at 780.825 kb on + strand, within ABZR88_RS03220 at 780.856 kb on + strand, within ABZR88_RS03220 at 780.941 kb on - strand, within ABZR88_RS03220 at 780.941 kb on - strand, within ABZR88_RS03220 at 780.947 kb on - strand, within ABZR88_RS03220 at 780.956 kb on - strand, within ABZR88_RS03220 at 780.994 kb on + strand, within ABZR88_RS03220 at 780.994 kb on + strand, within ABZR88_RS03220 at 780.995 kb on - strand, within ABZR88_RS03220 at 780.995 kb on - strand, within ABZR88_RS03220 at 780.995 kb on - strand, within ABZR88_RS03220 at 781.424 kb on - strand, within ABZR88_RS03220 at 781.458 kb on + strand, within ABZR88_RS03220 at 781.579 kb on + strand at 781.579 kb on + strand at 781.684 kb on - strand at 781.689 kb on + strand at 781.729 kb on + strand at 781.738 kb on + strand at 781.910 kb on + strand at 781.950 kb on - strand at 781.952 kb on - strand at 782.042 kb on - strand at 782.052 kb on - strand at 782.123 kb on - strand, within ABZR88_RS03225 at 782.289 kb on - strand, within ABZR88_RS03225 at 782.289 kb on - strand, within ABZR88_RS03225 at 782.307 kb on - strand, within ABZR88_RS03225 at 782.330 kb on + strand, within ABZR88_RS03225 at 782.399 kb on - strand, within ABZR88_RS03225 at 782.577 kb on - strand, within ABZR88_RS03225 at 782.642 kb on - strand, within ABZR88_RS03225 at 782.642 kb on - strand, within ABZR88_RS03225 at 782.648 kb on + strand, within ABZR88_RS03225 at 782.675 kb on - strand, within ABZR88_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Apigenin 50 ug/ml remove 778,901 - ABZR88_RS03215 0.72 -0.1 779,023 - ABZR88_RS03215 0.75 +0.0 779,269 + ABZR88_RS03215 0.83 +0.2 779,402 + ABZR88_RS03215 0.87 +0.2 779,507 + ABZR88_RS03215 0.90 -0.1 779,580 - -0.5 779,811 + -0.1 779,877 + -0.3 779,997 + -1.1 780,051 - ABZR88_RS03220 0.10 -0.6 780,192 + ABZR88_RS03220 0.18 -0.6 780,214 - ABZR88_RS03220 0.19 +0.5 780,217 + ABZR88_RS03220 0.19 -0.2 780,241 + ABZR88_RS03220 0.21 +0.1 780,482 + ABZR88_RS03220 0.33 -0.4 780,557 - ABZR88_RS03220 0.38 -0.3 780,688 - ABZR88_RS03220 0.45 -0.0 780,825 + ABZR88_RS03220 0.52 +0.1 780,856 + ABZR88_RS03220 0.54 -0.2 780,941 - ABZR88_RS03220 0.58 -0.0 780,941 - ABZR88_RS03220 0.58 -1.1 780,947 - ABZR88_RS03220 0.58 +0.6 780,956 - ABZR88_RS03220 0.59 +1.1 780,994 + ABZR88_RS03220 0.61 -0.0 780,994 + ABZR88_RS03220 0.61 -1.7 780,995 - ABZR88_RS03220 0.61 +0.1 780,995 - ABZR88_RS03220 0.61 -0.3 780,995 - ABZR88_RS03220 0.61 +0.2 781,424 - ABZR88_RS03220 0.84 -0.7 781,458 + ABZR88_RS03220 0.86 -0.3 781,579 + -0.2 781,579 + +0.3 781,684 - +0.8 781,689 + +0.5 781,729 + -0.0 781,738 + -0.2 781,910 + -0.5 781,950 - +1.5 781,952 - -0.2 782,042 - -1.3 782,052 - -0.8 782,123 - ABZR88_RS03225 0.14 -0.4 782,289 - ABZR88_RS03225 0.29 +0.4 782,289 - ABZR88_RS03225 0.29 -0.3 782,307 - ABZR88_RS03225 0.30 -0.1 782,330 + ABZR88_RS03225 0.32 -0.6 782,399 - ABZR88_RS03225 0.39 -0.5 782,577 - ABZR88_RS03225 0.55 +0.1 782,642 - ABZR88_RS03225 0.61 -1.1 782,642 - ABZR88_RS03225 0.61 -0.3 782,648 + ABZR88_RS03225 0.61 -0.5 782,675 - ABZR88_RS03225 0.64 -0.1
Or see this region's nucleotide sequence