Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15370

Experiment: R2A no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS15365 and ABZR88_RS15370 are separated by 89 nucleotidesABZR88_RS15370 and ABZR88_RS15375 are separated by 263 nucleotides ABZR88_RS15365: ABZR88_RS15365 - hypothetical protein, at 3,801,835 to 3,804,612 _RS15365 ABZR88_RS15370: ABZR88_RS15370 - transcriptional regulator, at 3,804,702 to 3,805,112 _RS15370 ABZR88_RS15375: ABZR88_RS15375 - TonB-dependent receptor, at 3,805,376 to 3,807,832 _RS15375 Position (kb) 3804 3805 3806Strain fitness (log2 ratio) -3 -2 -1 0 1at 3803.846 kb on - strand, within ABZR88_RS15365at 3803.895 kb on - strand, within ABZR88_RS15365at 3803.961 kb on + strand, within ABZR88_RS15365at 3803.961 kb on + strand, within ABZR88_RS15365at 3804.066 kb on + strand, within ABZR88_RS15365at 3804.066 kb on + strand, within ABZR88_RS15365at 3804.067 kb on - strand, within ABZR88_RS15365at 3804.127 kb on + strand, within ABZR88_RS15365at 3804.295 kb on + strand, within ABZR88_RS15365at 3804.296 kb on - strand, within ABZR88_RS15365at 3804.409 kb on + strandat 3804.409 kb on + strandat 3804.670 kb on + strandat 3804.915 kb on + strand, within ABZR88_RS15370at 3804.951 kb on + strand, within ABZR88_RS15370at 3804.952 kb on - strand, within ABZR88_RS15370at 3805.110 kb on + strandat 3805.114 kb on + strandat 3805.162 kb on + strandat 3805.320 kb on + strandat 3805.377 kb on + strandat 3805.660 kb on - strand, within ABZR88_RS15375at 3805.767 kb on + strand, within ABZR88_RS15375at 3805.768 kb on - strand, within ABZR88_RS15375at 3805.771 kb on + strand, within ABZR88_RS15375at 3805.771 kb on + strand, within ABZR88_RS15375at 3805.894 kb on + strand, within ABZR88_RS15375at 3805.948 kb on + strand, within ABZR88_RS15375at 3806.059 kb on - strand, within ABZR88_RS15375at 3806.059 kb on - strand, within ABZR88_RS15375at 3806.073 kb on - strand, within ABZR88_RS15375at 3806.104 kb on - strand, within ABZR88_RS15375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
remove
3,803,846 - ABZR88_RS15365 0.72 -1.0
3,803,895 - ABZR88_RS15365 0.74 +1.3
3,803,961 + ABZR88_RS15365 0.77 +0.3
3,803,961 + ABZR88_RS15365 0.77 -2.8
3,804,066 + ABZR88_RS15365 0.80 +0.3
3,804,066 + ABZR88_RS15365 0.80 -0.1
3,804,067 - ABZR88_RS15365 0.80 -0.5
3,804,127 + ABZR88_RS15365 0.83 +0.1
3,804,295 + ABZR88_RS15365 0.89 +1.0
3,804,296 - ABZR88_RS15365 0.89 -0.1
3,804,409 + -1.0
3,804,409 + -1.0
3,804,670 + -0.4
3,804,915 + ABZR88_RS15370 0.52 -0.9
3,804,951 + ABZR88_RS15370 0.61 -0.4
3,804,952 - ABZR88_RS15370 0.61 -0.1
3,805,110 + +0.0
3,805,114 + -2.6
3,805,162 + -0.3
3,805,320 + +0.1
3,805,377 + -0.3
3,805,660 - ABZR88_RS15375 0.12 -0.3
3,805,767 + ABZR88_RS15375 0.16 -0.7
3,805,768 - ABZR88_RS15375 0.16 -0.4
3,805,771 + ABZR88_RS15375 0.16 +0.3
3,805,771 + ABZR88_RS15375 0.16 +0.6
3,805,894 + ABZR88_RS15375 0.21 -1.6
3,805,948 + ABZR88_RS15375 0.23 -0.9
3,806,059 - ABZR88_RS15375 0.28 -1.1
3,806,059 - ABZR88_RS15375 0.28 -0.3
3,806,073 - ABZR88_RS15375 0.28 -0.6
3,806,104 - ABZR88_RS15375 0.30 -0.5

Or see this region's nucleotide sequence