Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12680

Experiment: R2A no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS12675 and ABZR88_RS12680 are separated by 168 nucleotidesABZR88_RS12680 and ABZR88_RS12685 are separated by 75 nucleotidesABZR88_RS12685 and ABZR88_RS12690 are separated by 131 nucleotides ABZR88_RS12675: ABZR88_RS12675 - NO-inducible flavohemoprotein, at 3,117,364 to 3,118,581 _RS12675 ABZR88_RS12680: ABZR88_RS12680 - hypothetical protein, at 3,118,750 to 3,119,229 _RS12680 ABZR88_RS12685: ABZR88_RS12685 - hypothetical protein, at 3,119,305 to 3,119,664 _RS12685 ABZR88_RS12690: ABZR88_RS12690 - MBL fold metallo-hydrolase, at 3,119,796 to 3,120,881 _RS12690 Position (kb) 3118 3119 3120Strain fitness (log2 ratio) -2 -1 0 1at 3117.785 kb on + strand, within ABZR88_RS12675at 3117.785 kb on + strand, within ABZR88_RS12675at 3117.786 kb on - strand, within ABZR88_RS12675at 3117.787 kb on + strand, within ABZR88_RS12675at 3117.788 kb on - strand, within ABZR88_RS12675at 3118.026 kb on + strand, within ABZR88_RS12675at 3118.118 kb on + strand, within ABZR88_RS12675at 3118.146 kb on + strand, within ABZR88_RS12675at 3118.214 kb on + strand, within ABZR88_RS12675at 3118.218 kb on + strand, within ABZR88_RS12675at 3118.218 kb on + strand, within ABZR88_RS12675at 3118.257 kb on + strand, within ABZR88_RS12675at 3118.344 kb on - strand, within ABZR88_RS12675at 3118.569 kb on - strandat 3118.586 kb on + strandat 3118.589 kb on - strandat 3118.712 kb on + strandat 3118.713 kb on - strandat 3118.713 kb on - strandat 3118.736 kb on + strandat 3118.751 kb on + strandat 3118.792 kb on + strandat 3118.865 kb on - strand, within ABZR88_RS12680at 3118.898 kb on - strand, within ABZR88_RS12680at 3118.904 kb on - strand, within ABZR88_RS12680at 3118.904 kb on - strand, within ABZR88_RS12680at 3118.904 kb on - strand, within ABZR88_RS12680at 3118.956 kb on + strand, within ABZR88_RS12680at 3118.959 kb on - strand, within ABZR88_RS12680at 3118.981 kb on + strand, within ABZR88_RS12680at 3119.010 kb on - strand, within ABZR88_RS12680at 3119.229 kb on + strandat 3119.332 kb on + strandat 3119.474 kb on - strand, within ABZR88_RS12685at 3119.474 kb on - strand, within ABZR88_RS12685at 3119.553 kb on + strand, within ABZR88_RS12685at 3119.554 kb on - strand, within ABZR88_RS12685at 3119.641 kb on - strandat 3119.714 kb on - strandat 3119.985 kb on - strand, within ABZR88_RS12690at 3119.992 kb on + strand, within ABZR88_RS12690at 3120.034 kb on + strand, within ABZR88_RS12690at 3120.214 kb on - strand, within ABZR88_RS12690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
remove
3,117,785 + ABZR88_RS12675 0.35 -1.3
3,117,785 + ABZR88_RS12675 0.35 -0.8
3,117,786 - ABZR88_RS12675 0.35 +0.5
3,117,787 + ABZR88_RS12675 0.35 -0.1
3,117,788 - ABZR88_RS12675 0.35 -0.0
3,118,026 + ABZR88_RS12675 0.54 -1.0
3,118,118 + ABZR88_RS12675 0.62 -0.4
3,118,146 + ABZR88_RS12675 0.64 -0.4
3,118,214 + ABZR88_RS12675 0.70 +0.5
3,118,218 + ABZR88_RS12675 0.70 -1.4
3,118,218 + ABZR88_RS12675 0.70 +0.2
3,118,257 + ABZR88_RS12675 0.73 -1.3
3,118,344 - ABZR88_RS12675 0.80 -2.7
3,118,569 - -0.4
3,118,586 + +0.5
3,118,589 - +0.1
3,118,712 + +0.2
3,118,713 - -1.6
3,118,713 - -0.6
3,118,736 + +0.0
3,118,751 + +1.1
3,118,792 + -0.9
3,118,865 - ABZR88_RS12680 0.24 +0.2
3,118,898 - ABZR88_RS12680 0.31 +0.1
3,118,904 - ABZR88_RS12680 0.32 -1.5
3,118,904 - ABZR88_RS12680 0.32 -0.4
3,118,904 - ABZR88_RS12680 0.32 -0.6
3,118,956 + ABZR88_RS12680 0.43 +1.1
3,118,959 - ABZR88_RS12680 0.44 +1.3
3,118,981 + ABZR88_RS12680 0.48 +0.4
3,119,010 - ABZR88_RS12680 0.54 -0.3
3,119,229 + -0.1
3,119,332 + -0.1
3,119,474 - ABZR88_RS12685 0.47 -0.4
3,119,474 - ABZR88_RS12685 0.47 -0.2
3,119,553 + ABZR88_RS12685 0.69 -1.3
3,119,554 - ABZR88_RS12685 0.69 +0.5
3,119,641 - +0.1
3,119,714 - +0.0
3,119,985 - ABZR88_RS12690 0.17 -1.5
3,119,992 + ABZR88_RS12690 0.18 +1.3
3,120,034 + ABZR88_RS12690 0.22 -1.4
3,120,214 - ABZR88_RS12690 0.38 -1.2

Or see this region's nucleotide sequence