Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12675 and ABZR88_RS12680 are separated by 168 nucleotides ABZR88_RS12680 and ABZR88_RS12685 are separated by 75 nucleotides ABZR88_RS12685 and ABZR88_RS12690 are separated by 131 nucleotides
ABZR88_RS12675: ABZR88_RS12675 - NO-inducible flavohemoprotein, at 3,117,364 to 3,118,581
_RS12675
ABZR88_RS12680: ABZR88_RS12680 - hypothetical protein, at 3,118,750 to 3,119,229
_RS12680
ABZR88_RS12685: ABZR88_RS12685 - hypothetical protein, at 3,119,305 to 3,119,664
_RS12685
ABZR88_RS12690: ABZR88_RS12690 - MBL fold metallo-hydrolase, at 3,119,796 to 3,120,881
_RS12690
Position (kb)
3118
3119
3120 Strain fitness (log2 ratio)
-2
-1
0
1 at 3117.785 kb on + strand, within ABZR88_RS12675 at 3117.785 kb on + strand, within ABZR88_RS12675 at 3117.786 kb on - strand, within ABZR88_RS12675 at 3117.787 kb on + strand, within ABZR88_RS12675 at 3117.788 kb on - strand, within ABZR88_RS12675 at 3118.026 kb on + strand, within ABZR88_RS12675 at 3118.118 kb on + strand, within ABZR88_RS12675 at 3118.146 kb on + strand, within ABZR88_RS12675 at 3118.214 kb on + strand, within ABZR88_RS12675 at 3118.218 kb on + strand, within ABZR88_RS12675 at 3118.218 kb on + strand, within ABZR88_RS12675 at 3118.257 kb on + strand, within ABZR88_RS12675 at 3118.344 kb on - strand, within ABZR88_RS12675 at 3118.569 kb on - strand at 3118.586 kb on + strand at 3118.589 kb on - strand at 3118.712 kb on + strand at 3118.713 kb on - strand at 3118.713 kb on - strand at 3118.736 kb on + strand at 3118.751 kb on + strand at 3118.792 kb on + strand at 3118.865 kb on - strand, within ABZR88_RS12680 at 3118.898 kb on - strand, within ABZR88_RS12680 at 3118.904 kb on - strand, within ABZR88_RS12680 at 3118.904 kb on - strand, within ABZR88_RS12680 at 3118.904 kb on - strand, within ABZR88_RS12680 at 3118.956 kb on + strand, within ABZR88_RS12680 at 3118.959 kb on - strand, within ABZR88_RS12680 at 3118.981 kb on + strand, within ABZR88_RS12680 at 3119.010 kb on - strand, within ABZR88_RS12680 at 3119.229 kb on + strand at 3119.332 kb on + strand at 3119.474 kb on - strand, within ABZR88_RS12685 at 3119.474 kb on - strand, within ABZR88_RS12685 at 3119.553 kb on + strand, within ABZR88_RS12685 at 3119.554 kb on - strand, within ABZR88_RS12685 at 3119.641 kb on - strand at 3119.714 kb on - strand at 3119.985 kb on - strand, within ABZR88_RS12690 at 3119.992 kb on + strand, within ABZR88_RS12690 at 3120.034 kb on + strand, within ABZR88_RS12690 at 3120.214 kb on - strand, within ABZR88_RS12690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 3,117,785 + ABZR88_RS12675 0.35 -1.3 3,117,785 + ABZR88_RS12675 0.35 -0.8 3,117,786 - ABZR88_RS12675 0.35 +0.5 3,117,787 + ABZR88_RS12675 0.35 -0.1 3,117,788 - ABZR88_RS12675 0.35 -0.0 3,118,026 + ABZR88_RS12675 0.54 -1.0 3,118,118 + ABZR88_RS12675 0.62 -0.4 3,118,146 + ABZR88_RS12675 0.64 -0.4 3,118,214 + ABZR88_RS12675 0.70 +0.5 3,118,218 + ABZR88_RS12675 0.70 -1.4 3,118,218 + ABZR88_RS12675 0.70 +0.2 3,118,257 + ABZR88_RS12675 0.73 -1.3 3,118,344 - ABZR88_RS12675 0.80 -2.7 3,118,569 - -0.4 3,118,586 + +0.5 3,118,589 - +0.1 3,118,712 + +0.2 3,118,713 - -1.6 3,118,713 - -0.6 3,118,736 + +0.0 3,118,751 + +1.1 3,118,792 + -0.9 3,118,865 - ABZR88_RS12680 0.24 +0.2 3,118,898 - ABZR88_RS12680 0.31 +0.1 3,118,904 - ABZR88_RS12680 0.32 -1.5 3,118,904 - ABZR88_RS12680 0.32 -0.4 3,118,904 - ABZR88_RS12680 0.32 -0.6 3,118,956 + ABZR88_RS12680 0.43 +1.1 3,118,959 - ABZR88_RS12680 0.44 +1.3 3,118,981 + ABZR88_RS12680 0.48 +0.4 3,119,010 - ABZR88_RS12680 0.54 -0.3 3,119,229 + -0.1 3,119,332 + -0.1 3,119,474 - ABZR88_RS12685 0.47 -0.4 3,119,474 - ABZR88_RS12685 0.47 -0.2 3,119,553 + ABZR88_RS12685 0.69 -1.3 3,119,554 - ABZR88_RS12685 0.69 +0.5 3,119,641 - +0.1 3,119,714 - +0.0 3,119,985 - ABZR88_RS12690 0.17 -1.5 3,119,992 + ABZR88_RS12690 0.18 +1.3 3,120,034 + ABZR88_RS12690 0.22 -1.4 3,120,214 - ABZR88_RS12690 0.38 -1.2
Or see this region's nucleotide sequence