Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07315

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07310 and ABZR88_RS07315 are separated by 88 nucleotidesABZR88_RS07315 and ABZR88_RS07320 are separated by 19 nucleotides ABZR88_RS07310: ABZR88_RS07310 - glycoside hydrolase family 28 protein, at 1,815,384 to 1,817,042 _RS07310 ABZR88_RS07315: ABZR88_RS07315 - RagB/SusD family nutrient uptake outer membrane protein, at 1,817,131 to 1,818,858 _RS07315 ABZR88_RS07320: ABZR88_RS07320 - TonB-dependent receptor, at 1,818,878 to 1,821,943 _RS07320 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1816.511 kb on + strand, within ABZR88_RS07310at 1816.572 kb on + strand, within ABZR88_RS07310at 1816.667 kb on + strand, within ABZR88_RS07310at 1816.814 kb on - strand, within ABZR88_RS07310at 1816.961 kb on + strandat 1817.050 kb on - strandat 1817.055 kb on + strandat 1817.132 kb on + strandat 1817.227 kb on + strandat 1817.243 kb on + strandat 1817.244 kb on - strandat 1817.247 kb on + strandat 1817.329 kb on + strand, within ABZR88_RS07315at 1817.385 kb on + strand, within ABZR88_RS07315at 1817.496 kb on - strand, within ABZR88_RS07315at 1817.753 kb on + strand, within ABZR88_RS07315at 1817.754 kb on - strand, within ABZR88_RS07315at 1817.790 kb on + strand, within ABZR88_RS07315at 1817.792 kb on + strand, within ABZR88_RS07315at 1817.956 kb on - strand, within ABZR88_RS07315at 1818.019 kb on - strand, within ABZR88_RS07315at 1818.046 kb on - strand, within ABZR88_RS07315at 1818.094 kb on - strand, within ABZR88_RS07315at 1818.135 kb on - strand, within ABZR88_RS07315at 1818.430 kb on - strand, within ABZR88_RS07315at 1818.550 kb on + strand, within ABZR88_RS07315at 1818.814 kb on + strandat 1818.918 kb on + strandat 1819.097 kb on - strandat 1819.099 kb on - strandat 1819.099 kb on - strandat 1819.316 kb on - strand, within ABZR88_RS07320at 1819.529 kb on + strand, within ABZR88_RS07320at 1819.578 kb on - strand, within ABZR88_RS07320at 1819.718 kb on - strand, within ABZR88_RS07320at 1819.719 kb on + strand, within ABZR88_RS07320at 1819.719 kb on + strand, within ABZR88_RS07320at 1819.829 kb on - strand, within ABZR88_RS07320

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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1,816,511 + ABZR88_RS07310 0.68 -1.3
1,816,572 + ABZR88_RS07310 0.72 +0.6
1,816,667 + ABZR88_RS07310 0.77 +0.1
1,816,814 - ABZR88_RS07310 0.86 -1.2
1,816,961 + -1.0
1,817,050 - -0.5
1,817,055 + -2.1
1,817,132 + -1.2
1,817,227 + -0.0
1,817,243 + -0.6
1,817,244 - -0.6
1,817,247 + -0.1
1,817,329 + ABZR88_RS07315 0.11 -0.0
1,817,385 + ABZR88_RS07315 0.15 +0.2
1,817,496 - ABZR88_RS07315 0.21 -2.6
1,817,753 + ABZR88_RS07315 0.36 -0.4
1,817,754 - ABZR88_RS07315 0.36 -0.4
1,817,790 + ABZR88_RS07315 0.38 +3.6
1,817,792 + ABZR88_RS07315 0.38 +0.6
1,817,956 - ABZR88_RS07315 0.48 -0.9
1,818,019 - ABZR88_RS07315 0.51 -0.1
1,818,046 - ABZR88_RS07315 0.53 -0.2
1,818,094 - ABZR88_RS07315 0.56 -1.9
1,818,135 - ABZR88_RS07315 0.58 -0.8
1,818,430 - ABZR88_RS07315 0.75 +0.4
1,818,550 + ABZR88_RS07315 0.82 -1.5
1,818,814 + -0.2
1,818,918 + -0.5
1,819,097 - +0.0
1,819,099 - +0.3
1,819,099 - -0.4
1,819,316 - ABZR88_RS07320 0.14 -1.2
1,819,529 + ABZR88_RS07320 0.21 +0.1
1,819,578 - ABZR88_RS07320 0.23 +0.3
1,819,718 - ABZR88_RS07320 0.27 -0.1
1,819,719 + ABZR88_RS07320 0.27 +0.1
1,819,719 + ABZR88_RS07320 0.27 +1.2
1,819,829 - ABZR88_RS07320 0.31 +0.6

Or see this region's nucleotide sequence