Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07310 and ABZR88_RS07315 are separated by 88 nucleotides ABZR88_RS07315 and ABZR88_RS07320 are separated by 19 nucleotides
ABZR88_RS07310: ABZR88_RS07310 - glycoside hydrolase family 28 protein, at 1,815,384 to 1,817,042
_RS07310
ABZR88_RS07315: ABZR88_RS07315 - RagB/SusD family nutrient uptake outer membrane protein, at 1,817,131 to 1,818,858
_RS07315
ABZR88_RS07320: ABZR88_RS07320 - TonB-dependent receptor, at 1,818,878 to 1,821,943
_RS07320
Position (kb)
1817
1818
1819 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1816.511 kb on + strand, within ABZR88_RS07310 at 1816.572 kb on + strand, within ABZR88_RS07310 at 1816.667 kb on + strand, within ABZR88_RS07310 at 1816.814 kb on - strand, within ABZR88_RS07310 at 1816.961 kb on + strand at 1817.050 kb on - strand at 1817.055 kb on + strand at 1817.132 kb on + strand at 1817.227 kb on + strand at 1817.243 kb on + strand at 1817.244 kb on - strand at 1817.247 kb on + strand at 1817.329 kb on + strand, within ABZR88_RS07315 at 1817.385 kb on + strand, within ABZR88_RS07315 at 1817.496 kb on - strand, within ABZR88_RS07315 at 1817.753 kb on + strand, within ABZR88_RS07315 at 1817.754 kb on - strand, within ABZR88_RS07315 at 1817.790 kb on + strand, within ABZR88_RS07315 at 1817.792 kb on + strand, within ABZR88_RS07315 at 1817.956 kb on - strand, within ABZR88_RS07315 at 1818.019 kb on - strand, within ABZR88_RS07315 at 1818.046 kb on - strand, within ABZR88_RS07315 at 1818.094 kb on - strand, within ABZR88_RS07315 at 1818.135 kb on - strand, within ABZR88_RS07315 at 1818.430 kb on - strand, within ABZR88_RS07315 at 1818.550 kb on + strand, within ABZR88_RS07315 at 1818.814 kb on + strand at 1818.918 kb on + strand at 1819.097 kb on - strand at 1819.099 kb on - strand at 1819.099 kb on - strand at 1819.316 kb on - strand, within ABZR88_RS07320 at 1819.529 kb on + strand, within ABZR88_RS07320 at 1819.578 kb on - strand, within ABZR88_RS07320 at 1819.718 kb on - strand, within ABZR88_RS07320 at 1819.719 kb on + strand, within ABZR88_RS07320 at 1819.719 kb on + strand, within ABZR88_RS07320 at 1819.829 kb on - strand, within ABZR88_RS07320
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,816,511 + ABZR88_RS07310 0.68 -1.3 1,816,572 + ABZR88_RS07310 0.72 +0.6 1,816,667 + ABZR88_RS07310 0.77 +0.1 1,816,814 - ABZR88_RS07310 0.86 -1.2 1,816,961 + -1.0 1,817,050 - -0.5 1,817,055 + -2.1 1,817,132 + -1.2 1,817,227 + -0.0 1,817,243 + -0.6 1,817,244 - -0.6 1,817,247 + -0.1 1,817,329 + ABZR88_RS07315 0.11 -0.0 1,817,385 + ABZR88_RS07315 0.15 +0.2 1,817,496 - ABZR88_RS07315 0.21 -2.6 1,817,753 + ABZR88_RS07315 0.36 -0.4 1,817,754 - ABZR88_RS07315 0.36 -0.4 1,817,790 + ABZR88_RS07315 0.38 +3.6 1,817,792 + ABZR88_RS07315 0.38 +0.6 1,817,956 - ABZR88_RS07315 0.48 -0.9 1,818,019 - ABZR88_RS07315 0.51 -0.1 1,818,046 - ABZR88_RS07315 0.53 -0.2 1,818,094 - ABZR88_RS07315 0.56 -1.9 1,818,135 - ABZR88_RS07315 0.58 -0.8 1,818,430 - ABZR88_RS07315 0.75 +0.4 1,818,550 + ABZR88_RS07315 0.82 -1.5 1,818,814 + -0.2 1,818,918 + -0.5 1,819,097 - +0.0 1,819,099 - +0.3 1,819,099 - -0.4 1,819,316 - ABZR88_RS07320 0.14 -1.2 1,819,529 + ABZR88_RS07320 0.21 +0.1 1,819,578 - ABZR88_RS07320 0.23 +0.3 1,819,718 - ABZR88_RS07320 0.27 -0.1 1,819,719 + ABZR88_RS07320 0.27 +0.1 1,819,719 + ABZR88_RS07320 0.27 +1.2 1,819,829 - ABZR88_RS07320 0.31 +0.6
Or see this region's nucleotide sequence