Experiment: R2A no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS04330 and ABZR88_RS04335 are separated by 75 nucleotides ABZR88_RS04335 and ABZR88_RS04340 are separated by 34 nucleotides
ABZR88_RS04330: ABZR88_RS04330 - TetR/AcrR family transcriptional regulator, at 1,033,995 to 1,034,609
_RS04330
ABZR88_RS04335: ABZR88_RS04335 - TolC family protein, at 1,034,685 to 1,036,061
_RS04335
ABZR88_RS04340: ABZR88_RS04340 - efflux RND transporter periplasmic adaptor subunit, at 1,036,096 to 1,037,214
_RS04340
Position (kb)
1034
1035
1036
1037 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1033.724 kb on - strand at 1033.872 kb on - strand at 1034.287 kb on + strand, within ABZR88_RS04330 at 1034.288 kb on - strand, within ABZR88_RS04330 at 1034.294 kb on + strand, within ABZR88_RS04330 at 1034.295 kb on - strand, within ABZR88_RS04330 at 1034.295 kb on - strand, within ABZR88_RS04330 at 1034.382 kb on - strand, within ABZR88_RS04330 at 1034.445 kb on - strand, within ABZR88_RS04330 at 1034.567 kb on + strand at 1034.568 kb on - strand at 1034.623 kb on - strand at 1034.798 kb on + strand at 1034.808 kb on + strand at 1034.849 kb on - strand, within ABZR88_RS04335 at 1034.929 kb on - strand, within ABZR88_RS04335 at 1035.189 kb on + strand, within ABZR88_RS04335 at 1035.190 kb on - strand, within ABZR88_RS04335 at 1035.260 kb on - strand, within ABZR88_RS04335 at 1035.305 kb on - strand, within ABZR88_RS04335 at 1035.330 kb on + strand, within ABZR88_RS04335 at 1035.332 kb on + strand, within ABZR88_RS04335 at 1035.519 kb on - strand, within ABZR88_RS04335 at 1035.569 kb on - strand, within ABZR88_RS04335 at 1035.843 kb on - strand, within ABZR88_RS04335 at 1036.111 kb on + strand at 1036.116 kb on - strand at 1036.161 kb on + strand at 1036.364 kb on + strand, within ABZR88_RS04340 at 1036.365 kb on - strand, within ABZR88_RS04340 at 1036.578 kb on - strand, within ABZR88_RS04340 at 1036.641 kb on + strand, within ABZR88_RS04340 at 1036.646 kb on - strand, within ABZR88_RS04340 at 1036.671 kb on + strand, within ABZR88_RS04340 at 1036.677 kb on - strand, within ABZR88_RS04340 at 1036.810 kb on - strand, within ABZR88_RS04340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A no stress control remove 1,033,724 - +0.6 1,033,872 - +0.8 1,034,287 + ABZR88_RS04330 0.47 +0.2 1,034,288 - ABZR88_RS04330 0.48 +1.0 1,034,294 + ABZR88_RS04330 0.49 -1.1 1,034,295 - ABZR88_RS04330 0.49 +0.5 1,034,295 - ABZR88_RS04330 0.49 +0.1 1,034,382 - ABZR88_RS04330 0.63 +0.5 1,034,445 - ABZR88_RS04330 0.73 -0.2 1,034,567 + +0.2 1,034,568 - +0.1 1,034,623 - -0.8 1,034,798 + -0.4 1,034,808 + -0.2 1,034,849 - ABZR88_RS04335 0.12 +0.0 1,034,929 - ABZR88_RS04335 0.18 +0.5 1,035,189 + ABZR88_RS04335 0.37 +0.0 1,035,190 - ABZR88_RS04335 0.37 -1.9 1,035,260 - ABZR88_RS04335 0.42 -0.1 1,035,305 - ABZR88_RS04335 0.45 -0.8 1,035,330 + ABZR88_RS04335 0.47 -1.1 1,035,332 + ABZR88_RS04335 0.47 -0.8 1,035,519 - ABZR88_RS04335 0.61 +0.5 1,035,569 - ABZR88_RS04335 0.64 -0.1 1,035,843 - ABZR88_RS04335 0.84 +1.3 1,036,111 + +0.1 1,036,116 - -1.0 1,036,161 + +0.7 1,036,364 + ABZR88_RS04340 0.24 -1.1 1,036,365 - ABZR88_RS04340 0.24 -0.5 1,036,578 - ABZR88_RS04340 0.43 -0.2 1,036,641 + ABZR88_RS04340 0.49 +1.8 1,036,646 - ABZR88_RS04340 0.49 +0.6 1,036,671 + ABZR88_RS04340 0.51 +0.2 1,036,677 - ABZR88_RS04340 0.52 -0.2 1,036,810 - ABZR88_RS04340 0.64 +0.6
Or see this region's nucleotide sequence