Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS04335

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS04330 and ABZR88_RS04335 are separated by 75 nucleotidesABZR88_RS04335 and ABZR88_RS04340 are separated by 34 nucleotides ABZR88_RS04330: ABZR88_RS04330 - TetR/AcrR family transcriptional regulator, at 1,033,995 to 1,034,609 _RS04330 ABZR88_RS04335: ABZR88_RS04335 - TolC family protein, at 1,034,685 to 1,036,061 _RS04335 ABZR88_RS04340: ABZR88_RS04340 - efflux RND transporter periplasmic adaptor subunit, at 1,036,096 to 1,037,214 _RS04340 Position (kb) 1034 1035 1036 1037Strain fitness (log2 ratio) -2 -1 0 1 2at 1033.724 kb on - strandat 1033.872 kb on - strandat 1034.287 kb on + strand, within ABZR88_RS04330at 1034.288 kb on - strand, within ABZR88_RS04330at 1034.294 kb on + strand, within ABZR88_RS04330at 1034.295 kb on - strand, within ABZR88_RS04330at 1034.295 kb on - strand, within ABZR88_RS04330at 1034.382 kb on - strand, within ABZR88_RS04330at 1034.445 kb on - strand, within ABZR88_RS04330at 1034.567 kb on + strandat 1034.568 kb on - strandat 1034.623 kb on - strandat 1034.798 kb on + strandat 1034.808 kb on + strandat 1034.849 kb on - strand, within ABZR88_RS04335at 1034.929 kb on - strand, within ABZR88_RS04335at 1035.189 kb on + strand, within ABZR88_RS04335at 1035.190 kb on - strand, within ABZR88_RS04335at 1035.260 kb on - strand, within ABZR88_RS04335at 1035.305 kb on - strand, within ABZR88_RS04335at 1035.330 kb on + strand, within ABZR88_RS04335at 1035.332 kb on + strand, within ABZR88_RS04335at 1035.519 kb on - strand, within ABZR88_RS04335at 1035.569 kb on - strand, within ABZR88_RS04335at 1035.843 kb on - strand, within ABZR88_RS04335at 1036.111 kb on + strandat 1036.116 kb on - strandat 1036.161 kb on + strandat 1036.364 kb on + strand, within ABZR88_RS04340at 1036.365 kb on - strand, within ABZR88_RS04340at 1036.578 kb on - strand, within ABZR88_RS04340at 1036.641 kb on + strand, within ABZR88_RS04340at 1036.646 kb on - strand, within ABZR88_RS04340at 1036.671 kb on + strand, within ABZR88_RS04340at 1036.677 kb on - strand, within ABZR88_RS04340at 1036.810 kb on - strand, within ABZR88_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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1,033,724 - +0.6
1,033,872 - +0.8
1,034,287 + ABZR88_RS04330 0.47 +0.2
1,034,288 - ABZR88_RS04330 0.48 +1.0
1,034,294 + ABZR88_RS04330 0.49 -1.1
1,034,295 - ABZR88_RS04330 0.49 +0.5
1,034,295 - ABZR88_RS04330 0.49 +0.1
1,034,382 - ABZR88_RS04330 0.63 +0.5
1,034,445 - ABZR88_RS04330 0.73 -0.2
1,034,567 + +0.2
1,034,568 - +0.1
1,034,623 - -0.8
1,034,798 + -0.4
1,034,808 + -0.2
1,034,849 - ABZR88_RS04335 0.12 +0.0
1,034,929 - ABZR88_RS04335 0.18 +0.5
1,035,189 + ABZR88_RS04335 0.37 +0.0
1,035,190 - ABZR88_RS04335 0.37 -1.9
1,035,260 - ABZR88_RS04335 0.42 -0.1
1,035,305 - ABZR88_RS04335 0.45 -0.8
1,035,330 + ABZR88_RS04335 0.47 -1.1
1,035,332 + ABZR88_RS04335 0.47 -0.8
1,035,519 - ABZR88_RS04335 0.61 +0.5
1,035,569 - ABZR88_RS04335 0.64 -0.1
1,035,843 - ABZR88_RS04335 0.84 +1.3
1,036,111 + +0.1
1,036,116 - -1.0
1,036,161 + +0.7
1,036,364 + ABZR88_RS04340 0.24 -1.1
1,036,365 - ABZR88_RS04340 0.24 -0.5
1,036,578 - ABZR88_RS04340 0.43 -0.2
1,036,641 + ABZR88_RS04340 0.49 +1.8
1,036,646 - ABZR88_RS04340 0.49 +0.6
1,036,671 + ABZR88_RS04340 0.51 +0.2
1,036,677 - ABZR88_RS04340 0.52 -0.2
1,036,810 - ABZR88_RS04340 0.64 +0.6

Or see this region's nucleotide sequence