Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS629 and tnp-IS629 overlap by 1 nucleotides tnp-IS629 and HEPCGN_26330 overlap by 119 nucleotides HEPCGN_26330 and pptA are separated by 304 nucleotides pptA and yddH are separated by 3 nucleotides
HEPCGN_26320: tnp-IS629 - IS3 family IS629 transposase, at 4,011,282 to 4,011,608
tnp-IS629
HEPCGN_26325: tnp-IS629 - IS3 family IS629 transposase, at 4,011,608 to 4,012,495
tnp-IS629
HEPCGN_26330: HEPCGN_26330 - hypothetical protein, at 4,012,377 to 4,012,859
_26330
HEPCGN_26335: pptA - tautomerase PptA, at 4,013,164 to 4,013,391
pptA
HEPCGN_26340: yddH - Uncharacterized protein YddH, at 4,013,395 to 4,013,964
yddH
Position (kb) 4012
4013 Strain fitness (log2 ratio) -1
0
1 at 4011.860 kb on - strand, within tnp-IS629 at 4012.554 kb on + strand, within HEPCGN_26330 at 4012.683 kb on - strand, within HEPCGN_26330 at 4012.815 kb on + strand at 4012.838 kb on + strand at 4012.862 kb on + strand at 4012.932 kb on + strand at 4013.002 kb on + strand at 4013.002 kb on + strand at 4013.048 kb on + strand at 4013.051 kb on + strand at 4013.110 kb on + strand at 4013.110 kb on + strand at 4013.111 kb on - strand at 4013.111 kb on - strand at 4013.182 kb on - strand at 4013.326 kb on - strand, within pptA at 4013.381 kb on - strand at 4013.390 kb on - strand at 4013.397 kb on - strand at 4013.457 kb on + strand, within yddH at 4013.760 kb on + strand, within yddH at 4013.794 kb on - strand, within yddH at 4013.794 kb on - strand, within yddH at 4013.798 kb on - strand, within yddH
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 4,011,860 - tnp-IS629 HEPCGN_26325 0.28 -0.2 4,012,554 + HEPCGN_26330 0.37 +0.2 4,012,683 - HEPCGN_26330 0.63 +0.7 4,012,815 + -0.4 4,012,838 + +0.7 4,012,862 + +0.1 4,012,932 + +0.3 4,013,002 + -0.3 4,013,002 + -0.4 4,013,048 + +0.6 4,013,051 + +0.4 4,013,110 + +0.0 4,013,110 + -0.4 4,013,111 - -0.7 4,013,111 - -0.3 4,013,182 - -1.7 4,013,326 - pptA HEPCGN_26335 0.71 +0.4 4,013,381 - +0.5 4,013,390 - -0.0 4,013,397 - +1.4 4,013,457 + yddH HEPCGN_26340 0.11 -0.2 4,013,760 + yddH HEPCGN_26340 0.64 -0.6 4,013,794 - yddH HEPCGN_26340 0.70 +0.6 4,013,794 - yddH HEPCGN_26340 0.70 +0.1 4,013,798 - yddH HEPCGN_26340 0.71 +0.5
Or see this region's nucleotide sequence