Strain Fitness in Escherichia coli ECOR38 around HEPCGN_11305

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphnJ and phnK overlap by 4 nucleotidesphnK and phnL are separated by 178 nucleotidesphnL and phnM overlap by 4 nucleotides HEPCGN_11295: phnJ - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 997,700 to 998,545 phnJ HEPCGN_11300: phnK - phosphonate C-P lyase system protein PhnK, at 998,542 to 999,300 phnK HEPCGN_11305: phnL - phosphonate C-P lyase system protein PhnL, at 999,479 to 1,000,159 phnL HEPCGN_11310: phnM - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 1,000,156 to 1,001,292 phnM Position (kb) 999 1000 1001Strain fitness (log2 ratio) -1 0 1at 998.556 kb on - strandat 998.556 kb on - strandat 998.749 kb on + strand, within phnKat 998.894 kb on - strand, within phnKat 999.041 kb on + strand, within phnKat 999.042 kb on - strand, within phnKat 999.158 kb on + strand, within phnKat 999.262 kb on + strandat 999.485 kb on - strandat 999.502 kb on + strandat 999.503 kb on - strandat 999.549 kb on + strand, within phnLat 999.549 kb on + strand, within phnLat 999.650 kb on + strand, within phnLat 999.650 kb on + strand, within phnLat 999.651 kb on - strand, within phnLat 999.837 kb on + strand, within phnLat 999.912 kb on + strand, within phnLat 999.913 kb on - strand, within phnLat 999.913 kb on - strand, within phnLat 1000.217 kb on + strandat 1000.217 kb on + strandat 1000.785 kb on + strand, within phnMat 1000.975 kb on - strand, within phnMat 1001.060 kb on - strand, within phnMat 1001.060 kb on - strand, within phnM

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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998,556 - -0.2
998,556 - -0.6
998,749 + phnK HEPCGN_11300 0.27 +0.2
998,894 - phnK HEPCGN_11300 0.46 -0.8
999,041 + phnK HEPCGN_11300 0.66 -0.6
999,042 - phnK HEPCGN_11300 0.66 +0.1
999,158 + phnK HEPCGN_11300 0.81 +0.2
999,262 + -0.5
999,485 - -0.6
999,502 + +0.1
999,503 - +0.5
999,549 + phnL HEPCGN_11305 0.10 +0.2
999,549 + phnL HEPCGN_11305 0.10 +0.2
999,650 + phnL HEPCGN_11305 0.25 -0.4
999,650 + phnL HEPCGN_11305 0.25 +0.0
999,651 - phnL HEPCGN_11305 0.25 +0.6
999,837 + phnL HEPCGN_11305 0.53 -0.3
999,912 + phnL HEPCGN_11305 0.64 -0.7
999,913 - phnL HEPCGN_11305 0.64 -1.0
999,913 - phnL HEPCGN_11305 0.64 -0.4
1,000,217 + +0.1
1,000,217 + +0.2
1,000,785 + phnM HEPCGN_11310 0.55 -0.1
1,000,975 - phnM HEPCGN_11310 0.72 +0.1
1,001,060 - phnM HEPCGN_11310 0.80 -0.5
1,001,060 - phnM HEPCGN_11310 0.80 -0.1

Or see this region's nucleotide sequence