Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lasT and arcA are separated by 635 nucleotides arcA and creD are separated by 59 nucleotides
HEPCGN_09125: lasT - tRNA/rRNA methyltransferase, at 572,647 to 573,333
lasT
HEPCGN_09130: arcA - two-component system response regulator ArcA, at 573,969 to 574,685
arcA
HEPCGN_09135: creD - cell envelope integrity protein CreD, at 574,745 to 576,097
creD
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1 at 573.081 kb on - strand, within lasT at 573.081 kb on - strand, within lasT at 573.328 kb on - strand at 573.333 kb on + strand at 573.334 kb on - strand at 573.577 kb on + strand at 573.584 kb on - strand at 573.594 kb on + strand at 573.634 kb on - strand at 573.667 kb on + strand at 573.682 kb on + strand at 573.683 kb on - strand at 573.684 kb on + strand at 573.684 kb on + strand at 573.685 kb on - strand at 573.735 kb on - strand at 573.813 kb on + strand at 573.813 kb on + strand at 573.859 kb on - strand at 573.862 kb on + strand at 573.867 kb on + strand at 573.868 kb on - strand at 573.868 kb on - strand at 573.928 kb on + strand at 573.957 kb on + strand at 574.760 kb on + strand at 574.760 kb on + strand at 574.761 kb on - strand at 574.777 kb on + strand at 574.778 kb on - strand at 574.829 kb on - strand at 574.832 kb on - strand at 575.002 kb on + strand, within creD at 575.002 kb on + strand, within creD at 575.121 kb on + strand, within creD at 575.121 kb on + strand, within creD at 575.122 kb on - strand, within creD at 575.135 kb on + strand, within creD at 575.209 kb on + strand, within creD at 575.209 kb on + strand, within creD at 575.226 kb on - strand, within creD at 575.226 kb on - strand, within creD at 575.324 kb on - strand, within creD at 575.327 kb on - strand, within creD at 575.449 kb on + strand, within creD at 575.450 kb on - strand, within creD at 575.450 kb on - strand, within creD at 575.504 kb on - strand, within creD at 575.552 kb on - strand, within creD at 575.642 kb on - strand, within creD at 575.642 kb on - strand, within creD at 575.685 kb on - strand, within creD at 575.685 kb on - strand, within creD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 573,081 - lasT HEPCGN_09125 0.63 -0.3 573,081 - lasT HEPCGN_09125 0.63 +0.6 573,328 - +0.1 573,333 + +0.3 573,334 - -1.4 573,577 + +0.2 573,584 - +0.0 573,594 + -0.1 573,634 - +0.9 573,667 + +0.4 573,682 + +0.5 573,683 - -0.4 573,684 + +0.8 573,684 + +0.9 573,685 - -1.5 573,735 - +0.1 573,813 + -0.1 573,813 + +0.4 573,859 - -0.9 573,862 + -1.1 573,867 + +1.2 573,868 - -0.9 573,868 - +1.2 573,928 + -1.4 573,957 + -1.2 574,760 + +0.8 574,760 + -1.1 574,761 - -0.2 574,777 + -0.5 574,778 - +0.6 574,829 - +0.4 574,832 - +0.4 575,002 + creD HEPCGN_09135 0.19 -0.4 575,002 + creD HEPCGN_09135 0.19 -0.1 575,121 + creD HEPCGN_09135 0.28 +0.2 575,121 + creD HEPCGN_09135 0.28 -1.0 575,122 - creD HEPCGN_09135 0.28 -0.4 575,135 + creD HEPCGN_09135 0.29 +0.5 575,209 + creD HEPCGN_09135 0.34 +0.2 575,209 + creD HEPCGN_09135 0.34 -0.7 575,226 - creD HEPCGN_09135 0.36 -0.1 575,226 - creD HEPCGN_09135 0.36 +0.2 575,324 - creD HEPCGN_09135 0.43 +0.3 575,327 - creD HEPCGN_09135 0.43 -0.3 575,449 + creD HEPCGN_09135 0.52 -0.3 575,450 - creD HEPCGN_09135 0.52 -0.6 575,450 - creD HEPCGN_09135 0.52 +0.2 575,504 - creD HEPCGN_09135 0.56 +0.4 575,552 - creD HEPCGN_09135 0.60 -0.5 575,642 - creD HEPCGN_09135 0.66 +0.5 575,642 - creD HEPCGN_09135 0.66 -0.1 575,685 - creD HEPCGN_09135 0.69 -0.5 575,685 - creD HEPCGN_09135 0.69 +0.3
Or see this region's nucleotide sequence