Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qmcA and ybbJ overlap by 4 nucleotides ybbJ and HEPCGN_06645 are separated by 102 nucleotides HEPCGN_06645 and hia are separated by 365 nucleotides
HEPCGN_06635: qmcA - Protein QmcA, at 42,073 to 42,990
qmcA
HEPCGN_06640: ybbJ - Inner membrane protein YbbJ, at 42,987 to 43,445
ybbJ
HEPCGN_06645: HEPCGN_06645 - hypothetical protein, at 43,548 to 43,910
_06645
HEPCGN_06650: hia - adhesin, at 44,276 to 45,292
hia
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 42.090 kb on + strand at 42.206 kb on + strand, within qmcA at 42.415 kb on - strand, within qmcA at 42.496 kb on - strand, within qmcA at 42.577 kb on - strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.625 kb on + strand, within qmcA at 42.626 kb on - strand, within qmcA at 42.731 kb on + strand, within qmcA at 42.732 kb on - strand, within qmcA at 42.814 kb on - strand, within qmcA at 42.814 kb on - strand, within qmcA at 42.814 kb on - strand, within qmcA at 42.847 kb on + strand, within qmcA at 42.848 kb on - strand, within qmcA at 42.848 kb on - strand, within qmcA at 42.860 kb on + strand, within qmcA at 42.861 kb on - strand, within qmcA at 43.017 kb on - strand at 43.078 kb on - strand, within ybbJ at 43.383 kb on - strand, within ybbJ at 43.464 kb on + strand at 43.464 kb on + strand at 43.473 kb on + strand at 43.480 kb on + strand at 43.550 kb on - strand at 43.645 kb on + strand, within HEPCGN_06645 at 43.646 kb on - strand, within HEPCGN_06645 at 43.681 kb on + strand, within HEPCGN_06645 at 43.799 kb on + strand, within HEPCGN_06645 at 43.812 kb on + strand, within HEPCGN_06645 at 43.812 kb on + strand, within HEPCGN_06645 at 43.858 kb on - strand, within HEPCGN_06645 at 43.940 kb on - strand at 44.133 kb on + strand at 44.133 kb on + strand at 44.133 kb on + strand at 44.134 kb on - strand at 44.134 kb on - strand at 44.134 kb on - strand at 44.155 kb on + strand at 44.292 kb on + strand at 44.298 kb on + strand at 44.299 kb on - strand at 44.310 kb on + strand at 44.310 kb on + strand at 44.340 kb on + strand at 44.387 kb on - strand, within hia at 44.426 kb on - strand, within hia
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 42,090 + +0.9 42,206 + qmcA HEPCGN_06635 0.14 -0.8 42,415 - qmcA HEPCGN_06635 0.37 -0.3 42,496 - qmcA HEPCGN_06635 0.46 +0.3 42,577 - qmcA HEPCGN_06635 0.55 +0.0 42,625 + qmcA HEPCGN_06635 0.60 -0.1 42,625 + qmcA HEPCGN_06635 0.60 -0.5 42,625 + qmcA HEPCGN_06635 0.60 +0.5 42,625 + qmcA HEPCGN_06635 0.60 +1.1 42,626 - qmcA HEPCGN_06635 0.60 -0.0 42,731 + qmcA HEPCGN_06635 0.72 +0.6 42,732 - qmcA HEPCGN_06635 0.72 -0.2 42,814 - qmcA HEPCGN_06635 0.81 +0.5 42,814 - qmcA HEPCGN_06635 0.81 +0.3 42,814 - qmcA HEPCGN_06635 0.81 -1.0 42,847 + qmcA HEPCGN_06635 0.84 +0.5 42,848 - qmcA HEPCGN_06635 0.84 +0.7 42,848 - qmcA HEPCGN_06635 0.84 +0.6 42,860 + qmcA HEPCGN_06635 0.86 -0.2 42,861 - qmcA HEPCGN_06635 0.86 +0.7 43,017 - -0.0 43,078 - ybbJ HEPCGN_06640 0.20 -0.0 43,383 - ybbJ HEPCGN_06640 0.86 +1.0 43,464 + -0.5 43,464 + +1.7 43,473 + -0.0 43,480 + -0.2 43,550 - +0.2 43,645 + HEPCGN_06645 0.27 -0.8 43,646 - HEPCGN_06645 0.27 +0.4 43,681 + HEPCGN_06645 0.37 +0.0 43,799 + HEPCGN_06645 0.69 -3.0 43,812 + HEPCGN_06645 0.73 +1.1 43,812 + HEPCGN_06645 0.73 -0.2 43,858 - HEPCGN_06645 0.85 -0.9 43,940 - +0.2 44,133 + -0.0 44,133 + -0.1 44,133 + -0.4 44,134 - -0.2 44,134 - +0.7 44,134 - -0.1 44,155 + -0.2 44,292 + +0.4 44,298 + +0.1 44,299 - +0.2 44,310 + +1.2 44,310 + +0.5 44,340 + -0.3 44,387 - hia HEPCGN_06650 0.11 -0.2 44,426 - hia HEPCGN_06650 0.15 +0.0
Or see this region's nucleotide sequence