Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06610

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybbA and tesA are separated by 49 nucleotidestesA and ybbO are separated by 28 nucleotidesybbO and cnoX are separated by 60 nucleotides HEPCGN_06600: ybbA - ABC transporter ATP-binding protein, at 37,318 to 38,004 ybbA HEPCGN_06605: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 38,054 to 38,590 tesA HEPCGN_06610: ybbO - NADP(+)-dependent aldehyde reductase, at 38,619 to 39,389 ybbO HEPCGN_06615: cnoX - chaperedoxin, at 39,450 to 40,304 cnoX Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1 2at 37.736 kb on - strand, within ybbAat 37.776 kb on + strand, within ybbAat 37.779 kb on + strand, within ybbAat 37.780 kb on - strand, within ybbAat 37.780 kb on - strand, within ybbAat 37.780 kb on - strand, within ybbAat 37.783 kb on + strand, within ybbAat 37.784 kb on - strand, within ybbAat 37.969 kb on - strandat 38.128 kb on + strand, within tesAat 38.128 kb on + strand, within tesAat 38.129 kb on - strand, within tesAat 38.141 kb on - strand, within tesAat 38.244 kb on + strand, within tesAat 38.361 kb on + strand, within tesAat 38.362 kb on - strand, within tesAat 38.392 kb on + strand, within tesAat 38.393 kb on - strand, within tesAat 38.393 kb on - strand, within tesAat 38.393 kb on - strand, within tesAat 38.475 kb on - strand, within tesAat 38.536 kb on + strand, within tesAat 38.575 kb on - strandat 38.612 kb on + strandat 38.635 kb on + strandat 38.635 kb on + strandat 38.636 kb on - strandat 38.856 kb on - strand, within ybbOat 38.877 kb on + strand, within ybbOat 38.877 kb on + strand, within ybbOat 38.877 kb on + strand, within ybbOat 38.877 kb on + strand, within ybbOat 38.877 kb on + strand, within ybbOat 38.878 kb on - strand, within ybbOat 38.878 kb on - strand, within ybbOat 38.878 kb on - strand, within ybbOat 38.878 kb on - strand, within ybbOat 39.000 kb on - strand, within ybbOat 39.066 kb on - strand, within ybbOat 39.109 kb on + strand, within ybbOat 39.110 kb on - strand, within ybbOat 39.110 kb on - strand, within ybbOat 39.125 kb on + strand, within ybbOat 39.158 kb on + strand, within ybbOat 39.197 kb on + strand, within ybbOat 39.198 kb on - strand, within ybbOat 39.278 kb on + strand, within ybbOat 39.341 kb on + strandat 39.572 kb on - strand, within cnoXat 39.694 kb on - strand, within cnoXat 39.694 kb on - strand, within cnoXat 39.837 kb on + strand, within cnoXat 39.837 kb on + strand, within cnoXat 39.837 kb on + strand, within cnoXat 40.215 kb on - strand, within cnoXat 40.215 kb on - strand, within cnoXat 40.300 kb on - strandat 40.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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37,736 - ybbA HEPCGN_06600 0.61 -0.1
37,776 + ybbA HEPCGN_06600 0.67 +0.5
37,779 + ybbA HEPCGN_06600 0.67 +0.0
37,780 - ybbA HEPCGN_06600 0.67 -0.0
37,780 - ybbA HEPCGN_06600 0.67 -0.1
37,780 - ybbA HEPCGN_06600 0.67 +0.2
37,783 + ybbA HEPCGN_06600 0.68 -0.8
37,784 - ybbA HEPCGN_06600 0.68 -0.3
37,969 - +0.6
38,128 + tesA HEPCGN_06605 0.14 -1.1
38,128 + tesA HEPCGN_06605 0.14 +0.6
38,129 - tesA HEPCGN_06605 0.14 -0.1
38,141 - tesA HEPCGN_06605 0.16 +0.1
38,244 + tesA HEPCGN_06605 0.35 -0.9
38,361 + tesA HEPCGN_06605 0.57 +0.2
38,362 - tesA HEPCGN_06605 0.57 +0.2
38,392 + tesA HEPCGN_06605 0.63 +0.4
38,393 - tesA HEPCGN_06605 0.63 +1.0
38,393 - tesA HEPCGN_06605 0.63 -0.6
38,393 - tesA HEPCGN_06605 0.63 -0.1
38,475 - tesA HEPCGN_06605 0.78 +0.9
38,536 + tesA HEPCGN_06605 0.90 +0.4
38,575 - -0.2
38,612 + +2.4
38,635 + +0.8
38,635 + +1.8
38,636 - +0.6
38,856 - ybbO HEPCGN_06610 0.31 +0.3
38,877 + ybbO HEPCGN_06610 0.33 -0.3
38,877 + ybbO HEPCGN_06610 0.33 -0.1
38,877 + ybbO HEPCGN_06610 0.33 -0.0
38,877 + ybbO HEPCGN_06610 0.33 +0.4
38,877 + ybbO HEPCGN_06610 0.33 +0.2
38,878 - ybbO HEPCGN_06610 0.34 +0.6
38,878 - ybbO HEPCGN_06610 0.34 +0.8
38,878 - ybbO HEPCGN_06610 0.34 +0.3
38,878 - ybbO HEPCGN_06610 0.34 -1.0
39,000 - ybbO HEPCGN_06610 0.49 -0.1
39,066 - ybbO HEPCGN_06610 0.58 +0.5
39,109 + ybbO HEPCGN_06610 0.64 +0.5
39,110 - ybbO HEPCGN_06610 0.64 +0.2
39,110 - ybbO HEPCGN_06610 0.64 +0.3
39,125 + ybbO HEPCGN_06610 0.66 -0.1
39,158 + ybbO HEPCGN_06610 0.70 +0.1
39,197 + ybbO HEPCGN_06610 0.75 -0.3
39,198 - ybbO HEPCGN_06610 0.75 -0.1
39,278 + ybbO HEPCGN_06610 0.85 -0.0
39,341 + +0.9
39,572 - cnoX HEPCGN_06615 0.14 -1.3
39,694 - cnoX HEPCGN_06615 0.29 +0.3
39,694 - cnoX HEPCGN_06615 0.29 -0.3
39,837 + cnoX HEPCGN_06615 0.45 +0.6
39,837 + cnoX HEPCGN_06615 0.45 -0.8
39,837 + cnoX HEPCGN_06615 0.45 -0.3
40,215 - cnoX HEPCGN_06615 0.89 +0.7
40,215 - cnoX HEPCGN_06615 0.89 +0.4
40,300 - +1.1
40,336 - +1.3

Or see this region's nucleotide sequence