Strain Fitness in Escherichia coli ECOR38 around HEPCGN_05095

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcdgI and yeaH are separated by 278 nucleotidesyeaH and yeaG are separated by 112 nucleotides HEPCGN_05090: cdgI - putative diguanylate cyclase CdgI, at 891,160 to 892,503 cdgI HEPCGN_05095: yeaH - UPF0229 protein YeaH, at 892,782 to 894,065 yeaH HEPCGN_05100: yeaG - protein kinase YeaG, at 894,178 to 896,112 yeaG Position (kb) 892 893 894 895Strain fitness (log2 ratio) -1 0 1 2at 891.974 kb on + strand, within cdgIat 891.991 kb on - strand, within cdgIat 892.419 kb on + strandat 892.835 kb on - strandat 892.839 kb on - strandat 892.883 kb on + strandat 892.945 kb on + strand, within yeaHat 893.070 kb on - strand, within yeaHat 893.214 kb on - strand, within yeaHat 893.215 kb on + strand, within yeaHat 893.236 kb on + strand, within yeaHat 893.237 kb on - strand, within yeaHat 893.409 kb on + strand, within yeaHat 893.410 kb on - strand, within yeaHat 893.410 kb on - strand, within yeaHat 893.600 kb on + strand, within yeaHat 893.891 kb on + strand, within yeaHat 893.997 kb on + strandat 894.079 kb on + strandat 894.080 kb on - strandat 894.094 kb on + strandat 894.189 kb on + strandat 894.204 kb on - strandat 894.218 kb on - strandat 894.239 kb on + strandat 894.240 kb on - strandat 894.255 kb on + strandat 894.255 kb on + strandat 894.256 kb on - strandat 894.591 kb on + strand, within yeaGat 894.770 kb on + strand, within yeaGat 894.951 kb on - strand, within yeaGat 894.951 kb on - strand, within yeaG

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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891,974 + cdgI HEPCGN_05090 0.61 +0.7
891,991 - cdgI HEPCGN_05090 0.62 -0.0
892,419 + -0.3
892,835 - +0.2
892,839 - +0.1
892,883 + -0.2
892,945 + yeaH HEPCGN_05095 0.13 -0.4
893,070 - yeaH HEPCGN_05095 0.22 +0.3
893,214 - yeaH HEPCGN_05095 0.34 +0.4
893,215 + yeaH HEPCGN_05095 0.34 +1.6
893,236 + yeaH HEPCGN_05095 0.35 -0.7
893,237 - yeaH HEPCGN_05095 0.35 +0.8
893,409 + yeaH HEPCGN_05095 0.49 +0.7
893,410 - yeaH HEPCGN_05095 0.49 +0.8
893,410 - yeaH HEPCGN_05095 0.49 +0.7
893,600 + yeaH HEPCGN_05095 0.64 +0.4
893,891 + yeaH HEPCGN_05095 0.86 -0.1
893,997 + -0.5
894,079 + +2.0
894,080 - -1.0
894,094 + +0.1
894,189 + +1.0
894,204 - +0.4
894,218 - +0.2
894,239 + -0.9
894,240 - -0.5
894,255 + +0.2
894,255 + +0.0
894,256 - -1.0
894,591 + yeaG HEPCGN_05100 0.21 +0.9
894,770 + yeaG HEPCGN_05100 0.31 +1.3
894,951 - yeaG HEPCGN_05100 0.40 -1.0
894,951 - yeaG HEPCGN_05100 0.40 +0.1

Or see this region's nucleotide sequence