Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04425

Experiment: Control_ECOR38

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHEPCGN_04405 and HEPCGN_04410 are separated by 11 nucleotidesHEPCGN_04410 and HEPCGN_04415 are separated by 10 nucleotidesHEPCGN_04415 and HEPCGN_04420 are separated by 21 nucleotidesHEPCGN_04420 and HEPCGN_04425 are separated by 71 nucleotidesHEPCGN_04425 and HEPCGN_04430 are separated by 89 nucleotidesHEPCGN_04430 and HEPCGN_04435 are separated by 15 nucleotides HEPCGN_04405: HEPCGN_04405 - DUF4754 domain-containing protein, at 770,104 to 770,346 _04405 HEPCGN_04410: HEPCGN_04410 - hypothetical protein, at 770,358 to 770,636 _04410 HEPCGN_04415: HEPCGN_04415 - DUF4761 domain-containing protein, at 770,647 to 770,997 _04415 HEPCGN_04420: HEPCGN_04420 - DNA-binding protein, at 771,019 to 771,222 _04420 HEPCGN_04425: HEPCGN_04425 - hypothetical protein, at 771,294 to 771,431 _04425 HEPCGN_04430: HEPCGN_04430 - transcriptional regulator, at 771,521 to 771,925 _04430 HEPCGN_04435: HEPCGN_04435 - Putative transmembrane protein, at 771,941 to 772,591 _04435 Position (kb) 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 770.360 kb on - strandat 770.518 kb on + strand, within HEPCGN_04410at 770.518 kb on + strand, within HEPCGN_04410at 770.575 kb on - strand, within HEPCGN_04410at 770.575 kb on - strand, within HEPCGN_04410at 770.648 kb on + strandat 770.648 kb on + strandat 770.717 kb on - strand, within HEPCGN_04415at 770.907 kb on + strand, within HEPCGN_04415at 770.907 kb on + strand, within HEPCGN_04415at 770.908 kb on - strand, within HEPCGN_04415at 770.910 kb on + strand, within HEPCGN_04415at 770.910 kb on + strand, within HEPCGN_04415at 770.950 kb on + strand, within HEPCGN_04415at 770.979 kb on + strandat 771.147 kb on + strand, within HEPCGN_04420at 771.148 kb on - strand, within HEPCGN_04420at 771.178 kb on + strand, within HEPCGN_04420at 771.182 kb on + strand, within HEPCGN_04420at 771.183 kb on - strand, within HEPCGN_04420at 771.183 kb on - strand, within HEPCGN_04420at 771.201 kb on + strand, within HEPCGN_04420at 771.211 kb on + strandat 771.213 kb on + strandat 771.451 kb on + strandat 771.453 kb on + strandat 771.466 kb on + strandat 771.865 kb on + strand, within HEPCGN_04430at 771.902 kb on + strandat 771.919 kb on + strandat 771.929 kb on + strandat 772.011 kb on + strand, within HEPCGN_04435at 772.099 kb on + strand, within HEPCGN_04435at 772.138 kb on + strand, within HEPCGN_04435at 772.198 kb on + strand, within HEPCGN_04435at 772.208 kb on - strand, within HEPCGN_04435at 772.285 kb on + strand, within HEPCGN_04435at 772.296 kb on + strand, within HEPCGN_04435at 772.296 kb on + strand, within HEPCGN_04435at 772.303 kb on - strand, within HEPCGN_04435at 772.360 kb on + strand, within HEPCGN_04435at 772.394 kb on - strand, within HEPCGN_04435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
remove
770,360 - -0.4
770,518 + HEPCGN_04410 0.57 -0.9
770,518 + HEPCGN_04410 0.57 +0.3
770,575 - HEPCGN_04410 0.78 +0.3
770,575 - HEPCGN_04410 0.78 -0.3
770,648 + -0.6
770,648 + -0.6
770,717 - HEPCGN_04415 0.20 -1.2
770,907 + HEPCGN_04415 0.74 -0.6
770,907 + HEPCGN_04415 0.74 -0.5
770,908 - HEPCGN_04415 0.74 -0.2
770,910 + HEPCGN_04415 0.75 +0.5
770,910 + HEPCGN_04415 0.75 +1.1
770,950 + HEPCGN_04415 0.86 -0.1
770,979 + -0.4
771,147 + HEPCGN_04420 0.63 +0.4
771,148 - HEPCGN_04420 0.63 +0.1
771,178 + HEPCGN_04420 0.78 +0.4
771,182 + HEPCGN_04420 0.80 +0.1
771,183 - HEPCGN_04420 0.80 -0.1
771,183 - HEPCGN_04420 0.80 +0.6
771,201 + HEPCGN_04420 0.89 +0.3
771,211 + +0.2
771,213 + -0.2
771,451 + -0.0
771,453 + +0.5
771,466 + -0.3
771,865 + HEPCGN_04430 0.85 +0.1
771,902 + +0.1
771,919 + +0.0
771,929 + -0.2
772,011 + HEPCGN_04435 0.11 +0.4
772,099 + HEPCGN_04435 0.24 +0.4
772,138 + HEPCGN_04435 0.30 +0.0
772,198 + HEPCGN_04435 0.39 +0.5
772,208 - HEPCGN_04435 0.41 +0.5
772,285 + HEPCGN_04435 0.53 -0.7
772,296 + HEPCGN_04435 0.55 -2.0
772,296 + HEPCGN_04435 0.55 -0.2
772,303 - HEPCGN_04435 0.56 -0.1
772,360 + HEPCGN_04435 0.64 -0.3
772,394 - HEPCGN_04435 0.70 +2.1

Or see this region's nucleotide sequence