Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04330 and HEPCGN_04335 are separated by 154 nucleotides HEPCGN_04335 and HEPCGN_04340 overlap by 1 nucleotides
HEPCGN_04330: HEPCGN_04330 - phage capsid protein, at 757,650 to 758,486
_04330
HEPCGN_04335: HEPCGN_04335 - oxidoreductase, at 758,641 to 760,392
_04335
HEPCGN_04340: HEPCGN_04340 - phage portal protein, at 760,392 to 761,438
_04340
Position (kb) 758
759
760
761 Strain fitness (log2 ratio) -1
0
1 at 757.808 kb on + strand, within HEPCGN_04330 at 757.808 kb on + strand, within HEPCGN_04330 at 758.119 kb on + strand, within HEPCGN_04330 at 758.228 kb on - strand, within HEPCGN_04330 at 758.265 kb on - strand, within HEPCGN_04330 at 758.333 kb on - strand, within HEPCGN_04330 at 758.400 kb on + strand, within HEPCGN_04330 at 758.400 kb on + strand, within HEPCGN_04330 at 758.622 kb on + strand at 758.622 kb on + strand at 758.623 kb on - strand at 758.627 kb on - strand at 758.729 kb on + strand at 758.746 kb on + strand at 759.356 kb on - strand, within HEPCGN_04335 at 759.356 kb on - strand, within HEPCGN_04335 at 759.356 kb on - strand, within HEPCGN_04335 at 759.461 kb on - strand, within HEPCGN_04335 at 759.461 kb on - strand, within HEPCGN_04335 at 759.543 kb on + strand, within HEPCGN_04335 at 759.715 kb on + strand, within HEPCGN_04335 at 759.716 kb on - strand, within HEPCGN_04335 at 759.717 kb on + strand, within HEPCGN_04335 at 759.717 kb on + strand, within HEPCGN_04335 at 759.718 kb on - strand, within HEPCGN_04335 at 759.718 kb on - strand, within HEPCGN_04335 at 759.718 kb on - strand, within HEPCGN_04335 at 759.718 kb on - strand, within HEPCGN_04335 at 760.075 kb on + strand, within HEPCGN_04335 at 760.082 kb on + strand, within HEPCGN_04335 at 760.108 kb on - strand, within HEPCGN_04335 at 760.236 kb on + strand at 760.236 kb on + strand at 760.268 kb on - strand at 760.526 kb on + strand, within HEPCGN_04340 at 760.526 kb on + strand, within HEPCGN_04340 at 760.527 kb on - strand, within HEPCGN_04340 at 760.530 kb on + strand, within HEPCGN_04340 at 760.530 kb on + strand, within HEPCGN_04340 at 760.530 kb on + strand, within HEPCGN_04340 at 760.643 kb on - strand, within HEPCGN_04340 at 760.656 kb on + strand, within HEPCGN_04340 at 760.657 kb on - strand, within HEPCGN_04340 at 760.752 kb on - strand, within HEPCGN_04340 at 760.794 kb on + strand, within HEPCGN_04340 at 760.795 kb on - strand, within HEPCGN_04340 at 760.795 kb on - strand, within HEPCGN_04340 at 760.830 kb on + strand, within HEPCGN_04340 at 760.830 kb on + strand, within HEPCGN_04340 at 760.831 kb on - strand, within HEPCGN_04340 at 760.901 kb on + strand, within HEPCGN_04340 at 760.943 kb on - strand, within HEPCGN_04340 at 760.990 kb on - strand, within HEPCGN_04340 at 761.025 kb on + strand, within HEPCGN_04340 at 761.045 kb on - strand, within HEPCGN_04340 at 761.080 kb on + strand, within HEPCGN_04340
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 757,808 + HEPCGN_04330 0.19 -0.0 757,808 + HEPCGN_04330 0.19 +0.5 758,119 + HEPCGN_04330 0.56 -0.2 758,228 - HEPCGN_04330 0.69 -0.5 758,265 - HEPCGN_04330 0.73 -0.0 758,333 - HEPCGN_04330 0.82 +0.7 758,400 + HEPCGN_04330 0.90 +0.2 758,400 + HEPCGN_04330 0.90 -0.1 758,622 + +0.1 758,622 + -0.4 758,623 - -0.7 758,627 - +0.4 758,729 + +0.5 758,746 + +0.1 759,356 - HEPCGN_04335 0.41 +0.5 759,356 - HEPCGN_04335 0.41 +0.2 759,356 - HEPCGN_04335 0.41 -0.0 759,461 - HEPCGN_04335 0.47 +0.1 759,461 - HEPCGN_04335 0.47 -0.0 759,543 + HEPCGN_04335 0.51 +0.4 759,715 + HEPCGN_04335 0.61 +1.0 759,716 - HEPCGN_04335 0.61 +0.0 759,717 + HEPCGN_04335 0.61 +0.6 759,717 + HEPCGN_04335 0.61 -0.4 759,718 - HEPCGN_04335 0.61 +0.5 759,718 - HEPCGN_04335 0.61 -0.5 759,718 - HEPCGN_04335 0.61 -0.0 759,718 - HEPCGN_04335 0.61 +1.5 760,075 + HEPCGN_04335 0.82 +0.9 760,082 + HEPCGN_04335 0.82 +0.0 760,108 - HEPCGN_04335 0.84 +0.0 760,236 + +0.1 760,236 + +0.1 760,268 - -0.4 760,526 + HEPCGN_04340 0.13 +0.3 760,526 + HEPCGN_04340 0.13 +1.0 760,527 - HEPCGN_04340 0.13 -0.7 760,530 + HEPCGN_04340 0.13 +1.1 760,530 + HEPCGN_04340 0.13 +0.1 760,530 + HEPCGN_04340 0.13 -0.2 760,643 - HEPCGN_04340 0.24 +1.1 760,656 + HEPCGN_04340 0.25 -0.6 760,657 - HEPCGN_04340 0.25 -0.2 760,752 - HEPCGN_04340 0.34 +0.8 760,794 + HEPCGN_04340 0.38 +0.4 760,795 - HEPCGN_04340 0.38 +1.1 760,795 - HEPCGN_04340 0.38 -0.2 760,830 + HEPCGN_04340 0.42 +0.1 760,830 + HEPCGN_04340 0.42 +0.2 760,831 - HEPCGN_04340 0.42 -0.3 760,901 + HEPCGN_04340 0.49 +0.6 760,943 - HEPCGN_04340 0.53 +0.6 760,990 - HEPCGN_04340 0.57 -0.2 761,025 + HEPCGN_04340 0.60 -0.4 761,045 - HEPCGN_04340 0.62 -0.5 761,080 + HEPCGN_04340 0.66 -1.2
Or see this region's nucleotide sequence