Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modF and modE are separated by 67 nucleotides modE and acrZ are separated by 128 nucleotides acrZ and modA are separated by 166 nucleotides modA and modB overlap by 1 nucleotides
HEPCGN_01565: modF - molybdate ABC transporter ATP-binding protein ModF, at 236,545 to 238,017
modF
HEPCGN_01570: modE - molybdenum-dependent transcriptional regulator, at 238,085 to 238,873
modE
HEPCGN_01575: acrZ - multidrug efflux pump accessory protein AcrZ, at 239,002 to 239,151
acrZ
HEPCGN_01580: modA - molybdate ABC transporter substrate-binding protein, at 239,318 to 240,091
modA
HEPCGN_01585: modB - molybdate ABC transporter permease subunit, at 240,091 to 240,780
modB
Position (kb) 239
240 Strain fitness (log2 ratio) -1
0
1
2 at 238.055 kb on + strand at 238.056 kb on - strand at 238.086 kb on + strand at 238.120 kb on + strand at 238.121 kb on - strand at 238.214 kb on + strand, within modE at 238.215 kb on - strand, within modE at 238.215 kb on - strand, within modE at 238.253 kb on - strand, within modE at 238.253 kb on - strand, within modE at 238.255 kb on + strand, within modE at 238.331 kb on + strand, within modE at 238.332 kb on - strand, within modE at 238.609 kb on - strand, within modE at 238.664 kb on - strand, within modE at 238.690 kb on + strand, within modE at 238.700 kb on + strand, within modE at 238.741 kb on - strand, within modE at 238.800 kb on - strand at 238.800 kb on - strand at 238.846 kb on + strand at 238.873 kb on + strand at 238.974 kb on - strand at 238.986 kb on - strand at 238.986 kb on - strand at 238.987 kb on + strand at 238.988 kb on - strand at 239.006 kb on + strand at 239.006 kb on + strand at 239.007 kb on - strand at 239.096 kb on + strand, within acrZ at 239.228 kb on + strand at 239.228 kb on + strand at 239.243 kb on - strand at 239.248 kb on + strand at 239.295 kb on - strand at 239.326 kb on + strand at 239.460 kb on - strand, within modA at 239.510 kb on - strand, within modA at 239.638 kb on + strand, within modA at 239.772 kb on - strand, within modA at 240.001 kb on + strand, within modA at 240.032 kb on + strand at 240.080 kb on - strand at 240.089 kb on + strand at 240.089 kb on + strand at 240.089 kb on + strand at 240.090 kb on - strand at 240.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 238,055 + -0.3 238,056 - +0.5 238,086 + +0.8 238,120 + +0.9 238,121 - +0.2 238,214 + modE HEPCGN_01570 0.16 -0.2 238,215 - modE HEPCGN_01570 0.16 -0.8 238,215 - modE HEPCGN_01570 0.16 +0.6 238,253 - modE HEPCGN_01570 0.21 +0.2 238,253 - modE HEPCGN_01570 0.21 -0.4 238,255 + modE HEPCGN_01570 0.22 +1.0 238,331 + modE HEPCGN_01570 0.31 +0.5 238,332 - modE HEPCGN_01570 0.31 -0.4 238,609 - modE HEPCGN_01570 0.66 +0.0 238,664 - modE HEPCGN_01570 0.73 +0.3 238,690 + modE HEPCGN_01570 0.77 +0.1 238,700 + modE HEPCGN_01570 0.78 -0.9 238,741 - modE HEPCGN_01570 0.83 -0.0 238,800 - -0.4 238,800 - -0.5 238,846 + +0.1 238,873 + +0.2 238,974 - +0.8 238,986 - +0.3 238,986 - +1.2 238,987 + +2.3 238,988 - -0.3 239,006 + +0.2 239,006 + +0.1 239,007 - +1.0 239,096 + acrZ HEPCGN_01575 0.63 +0.5 239,228 + +0.0 239,228 + +0.6 239,243 - +0.1 239,248 + +0.0 239,295 - -0.0 239,326 + -0.2 239,460 - modA HEPCGN_01580 0.18 +0.3 239,510 - modA HEPCGN_01580 0.25 -0.3 239,638 + modA HEPCGN_01580 0.41 -0.6 239,772 - modA HEPCGN_01580 0.59 +0.6 240,001 + modA HEPCGN_01580 0.88 +0.3 240,032 + -0.3 240,080 - -0.6 240,089 + -0.8 240,089 + +0.1 240,089 + -0.8 240,090 - +0.5 240,125 + +0.0
Or see this region's nucleotide sequence