Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glmL and glmS overlap by 1 nucleotides glmS and HEPCGN_01415 are separated by 546 nucleotides HEPCGN_01415 and HEPCGN_01420 are separated by 80 nucleotides
HEPCGN_01405: glmL - methylaspartate mutase accessory protein GlmL, at 211,697 to 213,085
glmL
HEPCGN_01410: glmS - methylaspartate mutase subunit S, at 213,085 to 213,534
glmS
HEPCGN_01415: HEPCGN_01415 - hypothetical protein, at 214,081 to 214,503
_01415
HEPCGN_01420: HEPCGN_01420 - hypothetical protein, at 214,584 to 215,528
_01420
Position (kb) 214
215 Strain fitness (log2 ratio) -1
0
1 at 213.111 kb on + strand at 213.112 kb on - strand at 213.136 kb on - strand, within glmS at 213.270 kb on - strand, within glmS at 213.344 kb on + strand, within glmS at 213.349 kb on - strand, within glmS at 213.349 kb on - strand, within glmS at 213.429 kb on + strand, within glmS at 213.482 kb on - strand, within glmS at 213.586 kb on - strand at 213.697 kb on - strand at 214.348 kb on + strand, within HEPCGN_01415 at 214.348 kb on + strand, within HEPCGN_01415 at 214.349 kb on - strand, within HEPCGN_01415 at 214.373 kb on + strand, within HEPCGN_01415 at 214.455 kb on - strand, within HEPCGN_01415 at 214.758 kb on + strand, within HEPCGN_01420 at 214.796 kb on + strand, within HEPCGN_01420 at 214.890 kb on + strand, within HEPCGN_01420 at 214.890 kb on + strand, within HEPCGN_01420 at 214.935 kb on + strand, within HEPCGN_01420 at 214.935 kb on + strand, within HEPCGN_01420 at 215.079 kb on - strand, within HEPCGN_01420 at 215.182 kb on + strand, within HEPCGN_01420 at 215.219 kb on + strand, within HEPCGN_01420 at 215.334 kb on - strand, within HEPCGN_01420 at 215.453 kb on + strand at 215.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 213,111 + +0.1 213,112 - -0.3 213,136 - glmS HEPCGN_01410 0.11 -0.3 213,270 - glmS HEPCGN_01410 0.41 +0.2 213,344 + glmS HEPCGN_01410 0.58 -0.4 213,349 - glmS HEPCGN_01410 0.59 -0.3 213,349 - glmS HEPCGN_01410 0.59 -0.3 213,429 + glmS HEPCGN_01410 0.76 -0.0 213,482 - glmS HEPCGN_01410 0.88 -0.1 213,586 - +0.5 213,697 - -0.3 214,348 + HEPCGN_01415 0.63 +0.0 214,348 + HEPCGN_01415 0.63 +1.3 214,349 - HEPCGN_01415 0.63 -1.1 214,373 + HEPCGN_01415 0.69 +0.6 214,455 - HEPCGN_01415 0.88 +0.6 214,758 + HEPCGN_01420 0.18 +0.1 214,796 + HEPCGN_01420 0.22 -0.0 214,890 + HEPCGN_01420 0.32 +0.4 214,890 + HEPCGN_01420 0.32 -0.2 214,935 + HEPCGN_01420 0.37 -0.3 214,935 + HEPCGN_01420 0.37 -0.1 215,079 - HEPCGN_01420 0.52 -0.3 215,182 + HEPCGN_01420 0.63 +0.5 215,219 + HEPCGN_01420 0.67 +0.8 215,334 - HEPCGN_01420 0.79 +0.1 215,453 + -0.1 215,475 - -0.1
Or see this region's nucleotide sequence