Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16070

Experiment: Hypoxanthine 0.7347 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS16060 and A4249_RS16065 are separated by 2 nucleotidesA4249_RS16065 and A4249_RS16070 are separated by 30 nucleotidesA4249_RS16070 and A4249_RS16075 are separated by 290 nucleotides A4249_RS16060: A4249_RS16060 - LPS export ABC transporter periplasmic protein LptC, at 3,235,109 to 3,235,768 _RS16060 A4249_RS16065: A4249_RS16065 - LptA/OstA family protein, at 3,235,771 to 3,236,259 _RS16065 A4249_RS16070: A4249_RS16070 - LPS export ABC transporter ATP-binding protein, at 3,236,290 to 3,237,081 _RS16070 A4249_RS16075: A4249_RS16075 - RNA polymerase factor sigma-54, at 3,237,372 to 3,238,871 _RS16075 Position (kb) 3236 3237 3238Strain fitness (log2 ratio) -1 0 1at 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.092 kb on + strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.093 kb on - strandat 3237.188 kb on + strandat 3237.189 kb on - strandat 3237.388 kb on + strandat 3237.389 kb on - strandat 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.651 kb on + strand, within A4249_RS16075at 3237.652 kb on - strand, within A4249_RS16075at 3237.652 kb on - strand, within A4249_RS16075at 3237.652 kb on - strand, within A4249_RS16075at 3237.894 kb on + strand, within A4249_RS16075at 3237.894 kb on + strand, within A4249_RS16075at 3237.894 kb on + strand, within A4249_RS16075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
remove
3,237,092 + +1.5
3,237,092 + +0.3
3,237,092 + +0.2
3,237,092 + -1.1
3,237,092 + -0.4
3,237,092 + -0.3
3,237,092 + +0.2
3,237,092 + -0.3
3,237,092 + +0.1
3,237,093 - -0.0
3,237,093 - -0.5
3,237,093 - +1.7
3,237,093 - -0.9
3,237,093 - +0.2
3,237,093 - -0.1
3,237,093 - +0.8
3,237,188 + -0.0
3,237,189 - +0.5
3,237,388 + -0.6
3,237,389 - +0.8
3,237,651 + A4249_RS16075 0.19 -0.2
3,237,651 + A4249_RS16075 0.19 +0.1
3,237,651 + A4249_RS16075 0.19 -0.1
3,237,651 + A4249_RS16075 0.19 +0.0
3,237,651 + A4249_RS16075 0.19 -0.7
3,237,651 + A4249_RS16075 0.19 +1.1
3,237,652 - A4249_RS16075 0.19 -0.5
3,237,652 - A4249_RS16075 0.19 -0.2
3,237,652 - A4249_RS16075 0.19 -0.2
3,237,894 + A4249_RS16075 0.35 +0.3
3,237,894 + A4249_RS16075 0.35 -0.5
3,237,894 + A4249_RS16075 0.35 +0.2

Or see this region's nucleotide sequence