Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15455

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15450 and A4249_RS15455 overlap by 8 nucleotidesA4249_RS15455 and A4249_RS15460 are separated by 6 nucleotidesA4249_RS15460 and A4249_RS15465 are separated by 102 nucleotides A4249_RS15450: A4249_RS15450 - NAD(P)-dependent glycerol-3-phosphate dehydrogenase, at 3,129,376 to 3,130,374 _RS15450 A4249_RS15455: A4249_RS15455 - Rieske (2Fe-2S) protein, at 3,130,367 to 3,130,750 _RS15455 A4249_RS15460: A4249_RS15460 - polyphosphate kinase 2, at 3,130,757 to 3,131,506 _RS15460 A4249_RS15465: A4249_RS15465 - extensin family protein, at 3,131,609 to 3,132,370 _RS15465 Position (kb) 3130 3131Strain fitness (log2 ratio) -1 0 1 2at 3130.599 kb on - strand, within A4249_RS15455at 3130.599 kb on - strand, within A4249_RS15455at 3130.857 kb on + strand, within A4249_RS15460at 3130.857 kb on + strand, within A4249_RS15460at 3130.857 kb on + strand, within A4249_RS15460at 3130.858 kb on - strand, within A4249_RS15460at 3130.920 kb on + strand, within A4249_RS15460at 3130.921 kb on - strand, within A4249_RS15460at 3130.921 kb on - strand, within A4249_RS15460at 3130.965 kb on + strand, within A4249_RS15460at 3130.965 kb on + strand, within A4249_RS15460at 3130.966 kb on - strand, within A4249_RS15460at 3130.966 kb on - strand, within A4249_RS15460at 3130.966 kb on - strand, within A4249_RS15460at 3131.176 kb on - strand, within A4249_RS15460at 3131.208 kb on + strand, within A4249_RS15460at 3131.263 kb on - strand, within A4249_RS15460at 3131.263 kb on - strand, within A4249_RS15460at 3131.263 kb on - strand, within A4249_RS15460at 3131.263 kb on - strand, within A4249_RS15460at 3131.263 kb on - strand, within A4249_RS15460at 3131.274 kb on + strand, within A4249_RS15460at 3131.275 kb on - strand, within A4249_RS15460at 3131.275 kb on - strand, within A4249_RS15460at 3131.275 kb on - strand, within A4249_RS15460at 3131.276 kb on - strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.341 kb on + strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.342 kb on - strand, within A4249_RS15460at 3131.484 kb on + strandat 3131.485 kb on - strandat 3131.485 kb on - strandat 3131.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,130,599 - A4249_RS15455 0.60 -0.2
3,130,599 - A4249_RS15455 0.60 +0.5
3,130,857 + A4249_RS15460 0.13 +0.8
3,130,857 + A4249_RS15460 0.13 -0.2
3,130,857 + A4249_RS15460 0.13 +0.3
3,130,858 - A4249_RS15460 0.13 -0.2
3,130,920 + A4249_RS15460 0.22 +0.5
3,130,921 - A4249_RS15460 0.22 -0.7
3,130,921 - A4249_RS15460 0.22 -0.2
3,130,965 + A4249_RS15460 0.28 -1.1
3,130,965 + A4249_RS15460 0.28 -0.7
3,130,966 - A4249_RS15460 0.28 +0.6
3,130,966 - A4249_RS15460 0.28 +1.4
3,130,966 - A4249_RS15460 0.28 +0.0
3,131,176 - A4249_RS15460 0.56 +1.7
3,131,208 + A4249_RS15460 0.60 +0.8
3,131,263 - A4249_RS15460 0.67 -1.3
3,131,263 - A4249_RS15460 0.67 +0.3
3,131,263 - A4249_RS15460 0.67 -0.7
3,131,263 - A4249_RS15460 0.67 -0.5
3,131,263 - A4249_RS15460 0.67 +0.2
3,131,274 + A4249_RS15460 0.69 +0.2
3,131,275 - A4249_RS15460 0.69 +1.4
3,131,275 - A4249_RS15460 0.69 -0.9
3,131,275 - A4249_RS15460 0.69 +0.8
3,131,276 - A4249_RS15460 0.69 +0.3
3,131,341 + A4249_RS15460 0.78 -1.6
3,131,341 + A4249_RS15460 0.78 -0.1
3,131,341 + A4249_RS15460 0.78 -0.7
3,131,341 + A4249_RS15460 0.78 +0.4
3,131,341 + A4249_RS15460 0.78 -0.4
3,131,341 + A4249_RS15460 0.78 +0.3
3,131,341 + A4249_RS15460 0.78 +0.9
3,131,341 + A4249_RS15460 0.78 -0.1
3,131,341 + A4249_RS15460 0.78 +0.5
3,131,341 + A4249_RS15460 0.78 +0.4
3,131,341 + A4249_RS15460 0.78 +0.3
3,131,341 + A4249_RS15460 0.78 -0.5
3,131,341 + A4249_RS15460 0.78 +0.3
3,131,341 + A4249_RS15460 0.78 -0.2
3,131,341 + A4249_RS15460 0.78 +0.7
3,131,341 + A4249_RS15460 0.78 +0.0
3,131,341 + A4249_RS15460 0.78 -0.3
3,131,341 + A4249_RS15460 0.78 +1.7
3,131,342 - A4249_RS15460 0.78 -0.2
3,131,342 - A4249_RS15460 0.78 +1.1
3,131,342 - A4249_RS15460 0.78 -0.3
3,131,342 - A4249_RS15460 0.78 -0.2
3,131,342 - A4249_RS15460 0.78 +0.4
3,131,342 - A4249_RS15460 0.78 -0.2
3,131,342 - A4249_RS15460 0.78 -0.0
3,131,342 - A4249_RS15460 0.78 -0.4
3,131,342 - A4249_RS15460 0.78 +0.3
3,131,342 - A4249_RS15460 0.78 -0.1
3,131,342 - A4249_RS15460 0.78 -0.0
3,131,342 - A4249_RS15460 0.78 +1.6
3,131,342 - A4249_RS15460 0.78 +0.4
3,131,342 - A4249_RS15460 0.78 -0.2
3,131,342 - A4249_RS15460 0.78 -0.3
3,131,342 - A4249_RS15460 0.78 -0.0
3,131,484 + +0.5
3,131,485 - +2.4
3,131,485 - +1.6
3,131,485 - +0.5

Or see this region's nucleotide sequence