Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15410

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15400 and A4249_RS15405 are separated by 159 nucleotidesA4249_RS15405 and A4249_RS15410 are separated by 27 nucleotidesA4249_RS15410 and A4249_RS15415 are separated by 14 nucleotidesA4249_RS15415 and A4249_RS15420 are separated by 5 nucleotidesA4249_RS15420 and A4249_RS15425 are separated by 0 nucleotides A4249_RS15400: A4249_RS15400 - methionine adenosyltransferase, at 3,122,830 to 3,124,035 _RS15400 A4249_RS15405: A4249_RS15405 - helix-turn-helix transcriptional regulator, at 3,124,195 to 3,124,641 _RS15405 A4249_RS15410: A4249_RS15410 - hypothetical protein, at 3,124,669 to 3,125,007 _RS15410 A4249_RS15415: A4249_RS15415 - hypothetical protein, at 3,125,022 to 3,125,477 _RS15415 A4249_RS15420: A4249_RS15420 - hypothetical protein, at 3,125,483 to 3,125,851 _RS15420 A4249_RS15425: A4249_RS15425 - helix-turn-helix transcriptional regulator, at 3,125,852 to 3,126,205 _RS15425 Position (kb) 3124 3125 3126Strain fitness (log2 ratio) -1 0 1 2at 3124.072 kb on - strandat 3124.078 kb on - strandat 3124.078 kb on - strandat 3124.105 kb on + strandat 3124.105 kb on + strandat 3124.138 kb on + strandat 3124.139 kb on - strandat 3124.144 kb on + strandat 3124.144 kb on + strandat 3124.145 kb on - strandat 3124.145 kb on - strandat 3124.145 kb on - strandat 3124.145 kb on - strandat 3124.167 kb on + strandat 3124.230 kb on + strandat 3124.230 kb on + strandat 3124.230 kb on + strandat 3124.230 kb on + strandat 3124.230 kb on + strandat 3124.231 kb on - strandat 3124.231 kb on - strandat 3124.231 kb on - strandat 3124.231 kb on - strandat 3124.231 kb on - strandat 3124.231 kb on - strandat 3124.284 kb on + strand, within A4249_RS15405at 3124.284 kb on + strand, within A4249_RS15405at 3124.284 kb on + strand, within A4249_RS15405at 3124.284 kb on + strand, within A4249_RS15405at 3124.285 kb on - strand, within A4249_RS15405at 3124.285 kb on - strand, within A4249_RS15405at 3124.285 kb on - strand, within A4249_RS15405at 3124.324 kb on + strand, within A4249_RS15405at 3124.325 kb on - strand, within A4249_RS15405at 3124.325 kb on - strand, within A4249_RS15405at 3124.362 kb on + strand, within A4249_RS15405at 3124.362 kb on + strand, within A4249_RS15405at 3124.363 kb on - strand, within A4249_RS15405at 3124.374 kb on + strand, within A4249_RS15405at 3124.374 kb on + strand, within A4249_RS15405at 3124.375 kb on - strand, within A4249_RS15405at 3124.375 kb on - strand, within A4249_RS15405at 3124.397 kb on + strand, within A4249_RS15405at 3124.397 kb on + strand, within A4249_RS15405at 3124.398 kb on - strand, within A4249_RS15405at 3124.398 kb on - strand, within A4249_RS15405at 3124.422 kb on + strand, within A4249_RS15405at 3124.423 kb on - strand, within A4249_RS15405at 3124.423 kb on - strand, within A4249_RS15405at 3124.423 kb on - strand, within A4249_RS15405at 3124.652 kb on + strandat 3124.652 kb on + strandat 3124.652 kb on + strandat 3124.652 kb on + strandat 3124.653 kb on - strandat 3124.653 kb on - strandat 3124.653 kb on - strandat 3124.653 kb on - strandat 3124.653 kb on - strandat 3124.833 kb on + strand, within A4249_RS15410at 3124.833 kb on + strand, within A4249_RS15410at 3124.834 kb on - strand, within A4249_RS15410at 3124.834 kb on - strand, within A4249_RS15410at 3124.834 kb on - strand, within A4249_RS15410at 3124.834 kb on - strand, within A4249_RS15410at 3124.834 kb on - strand, within A4249_RS15410at 3124.848 kb on - strand, within A4249_RS15410at 3124.870 kb on - strand, within A4249_RS15410at 3125.061 kb on + strandat 3125.062 kb on - strandat 3125.135 kb on + strand, within A4249_RS15415at 3125.136 kb on - strand, within A4249_RS15415at 3125.136 kb on - strand, within A4249_RS15415at 3125.136 kb on - strand, within A4249_RS15415at 3125.245 kb on - strand, within A4249_RS15415at 3125.347 kb on + strand, within A4249_RS15415at 3125.347 kb on + strand, within A4249_RS15415at 3125.424 kb on + strand, within A4249_RS15415at 3125.488 kb on + strandat 3125.488 kb on + strandat 3125.488 kb on + strandat 3125.489 kb on - strandat 3125.489 kb on - strandat 3125.563 kb on - strand, within A4249_RS15420at 3125.563 kb on - strand, within A4249_RS15420at 3125.563 kb on - strand, within A4249_RS15420

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,124,072 - +0.9
3,124,078 - +1.3
3,124,078 - -0.7
3,124,105 + -0.1
3,124,105 + -1.1
3,124,138 + -0.1
3,124,139 - -0.7
3,124,144 + -0.9
3,124,144 + -0.7
3,124,145 - -0.7
3,124,145 - -0.2
3,124,145 - -0.7
3,124,145 - -0.4
3,124,167 + -0.3
3,124,230 + -0.6
3,124,230 + +0.8
3,124,230 + +0.4
3,124,230 + -1.0
3,124,230 + +1.3
3,124,231 - -0.9
3,124,231 - -0.2
3,124,231 - -0.2
3,124,231 - -0.0
3,124,231 - +0.1
3,124,231 - -0.5
3,124,284 + A4249_RS15405 0.20 -0.3
3,124,284 + A4249_RS15405 0.20 +0.0
3,124,284 + A4249_RS15405 0.20 -0.1
3,124,284 + A4249_RS15405 0.20 +0.2
3,124,285 - A4249_RS15405 0.20 +1.1
3,124,285 - A4249_RS15405 0.20 -0.2
3,124,285 - A4249_RS15405 0.20 +0.0
3,124,324 + A4249_RS15405 0.29 +0.5
3,124,325 - A4249_RS15405 0.29 +1.2
3,124,325 - A4249_RS15405 0.29 -0.0
3,124,362 + A4249_RS15405 0.37 -0.1
3,124,362 + A4249_RS15405 0.37 +1.5
3,124,363 - A4249_RS15405 0.38 -0.4
3,124,374 + A4249_RS15405 0.40 +0.2
3,124,374 + A4249_RS15405 0.40 -0.5
3,124,375 - A4249_RS15405 0.40 -1.0
3,124,375 - A4249_RS15405 0.40 -0.9
3,124,397 + A4249_RS15405 0.45 -0.7
3,124,397 + A4249_RS15405 0.45 -0.4
3,124,398 - A4249_RS15405 0.45 +0.6
3,124,398 - A4249_RS15405 0.45 -0.7
3,124,422 + A4249_RS15405 0.51 -0.4
3,124,423 - A4249_RS15405 0.51 +1.1
3,124,423 - A4249_RS15405 0.51 -0.5
3,124,423 - A4249_RS15405 0.51 -0.4
3,124,652 + +0.5
3,124,652 + -0.5
3,124,652 + +0.8
3,124,652 + +0.0
3,124,653 - +0.2
3,124,653 - +0.6
3,124,653 - -1.6
3,124,653 - -0.3
3,124,653 - -0.9
3,124,833 + A4249_RS15410 0.48 +1.0
3,124,833 + A4249_RS15410 0.48 -0.1
3,124,834 - A4249_RS15410 0.49 +1.3
3,124,834 - A4249_RS15410 0.49 -0.3
3,124,834 - A4249_RS15410 0.49 +0.7
3,124,834 - A4249_RS15410 0.49 +1.8
3,124,834 - A4249_RS15410 0.49 +0.4
3,124,848 - A4249_RS15410 0.53 +0.0
3,124,870 - A4249_RS15410 0.59 +0.3
3,125,061 + +0.9
3,125,062 - -0.1
3,125,135 + A4249_RS15415 0.25 +0.5
3,125,136 - A4249_RS15415 0.25 +1.8
3,125,136 - A4249_RS15415 0.25 +1.3
3,125,136 - A4249_RS15415 0.25 +0.3
3,125,245 - A4249_RS15415 0.49 -0.3
3,125,347 + A4249_RS15415 0.71 +0.1
3,125,347 + A4249_RS15415 0.71 +0.0
3,125,424 + A4249_RS15415 0.88 -0.3
3,125,488 + -0.9
3,125,488 + -0.0
3,125,488 + +1.3
3,125,489 - +0.0
3,125,489 - -1.0
3,125,563 - A4249_RS15420 0.22 +1.5
3,125,563 - A4249_RS15420 0.22 -0.9
3,125,563 - A4249_RS15420 0.22 +1.1

Or see this region's nucleotide sequence