Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15375

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15370 and A4249_RS15375 are separated by 476 nucleotidesA4249_RS15375 and A4249_RS15380 are separated by 340 nucleotides A4249_RS15370: A4249_RS15370 - chromosomal replication initiator protein DnaA, at 3,114,896 to 3,116,350 _RS15370 A4249_RS15375: A4249_RS15375 - 30S ribosomal protein S20, at 3,116,827 to 3,117,096 _RS15375 A4249_RS15380: A4249_RS15380 - TonB-dependent receptor plug domain-containing protein, at 3,117,437 to 3,119,965 _RS15380 Position (kb) 3116 3117 3118Strain fitness (log2 ratio) -1 0 1 2at 3117.416 kb on + strandat 3117.528 kb on + strandat 3117.528 kb on + strandat 3117.529 kb on - strandat 3117.641 kb on + strandat 3117.642 kb on - strandat 3117.642 kb on - strandat 3117.642 kb on - strandat 3117.763 kb on + strand, within A4249_RS15380at 3117.763 kb on + strand, within A4249_RS15380at 3117.763 kb on + strand, within A4249_RS15380at 3117.763 kb on + strand, within A4249_RS15380at 3117.763 kb on + strand, within A4249_RS15380at 3117.763 kb on + strand, within A4249_RS15380at 3117.763 kb on + strand, within A4249_RS15380at 3117.764 kb on - strand, within A4249_RS15380at 3117.764 kb on - strand, within A4249_RS15380at 3117.848 kb on + strand, within A4249_RS15380at 3117.848 kb on + strand, within A4249_RS15380at 3117.848 kb on + strand, within A4249_RS15380at 3117.849 kb on - strand, within A4249_RS15380at 3117.849 kb on - strand, within A4249_RS15380at 3117.854 kb on + strand, within A4249_RS15380at 3117.854 kb on + strand, within A4249_RS15380at 3117.854 kb on + strand, within A4249_RS15380at 3117.855 kb on - strand, within A4249_RS15380at 3117.855 kb on - strand, within A4249_RS15380

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,117,416 + -1.2
3,117,528 + -0.4
3,117,528 + +0.3
3,117,529 - +1.3
3,117,641 + +0.3
3,117,642 - -0.3
3,117,642 - -0.9
3,117,642 - -0.1
3,117,763 + A4249_RS15380 0.13 -0.9
3,117,763 + A4249_RS15380 0.13 +0.6
3,117,763 + A4249_RS15380 0.13 +1.8
3,117,763 + A4249_RS15380 0.13 -0.2
3,117,763 + A4249_RS15380 0.13 -0.1
3,117,763 + A4249_RS15380 0.13 -0.0
3,117,763 + A4249_RS15380 0.13 -0.3
3,117,764 - A4249_RS15380 0.13 -0.0
3,117,764 - A4249_RS15380 0.13 -1.3
3,117,848 + A4249_RS15380 0.16 -1.0
3,117,848 + A4249_RS15380 0.16 +0.1
3,117,848 + A4249_RS15380 0.16 +0.5
3,117,849 - A4249_RS15380 0.16 +0.5
3,117,849 - A4249_RS15380 0.16 +0.5
3,117,854 + A4249_RS15380 0.16 +0.2
3,117,854 + A4249_RS15380 0.16 +0.4
3,117,854 + A4249_RS15380 0.16 -0.2
3,117,855 - A4249_RS15380 0.17 +1.3
3,117,855 - A4249_RS15380 0.17 -1.1

Or see this region's nucleotide sequence