Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15195

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15190 and A4249_RS15195 are separated by 4 nucleotidesA4249_RS15195 and A4249_RS15200 are separated by 161 nucleotidesA4249_RS15200 and A4249_RS15205 overlap by 4 nucleotides A4249_RS15190: A4249_RS15190 - acetate--CoA ligase, at 3,070,239 to 3,072,194 _RS15190 A4249_RS15195: A4249_RS15195 - DcaP family trimeric outer membrane transporter, at 3,072,199 to 3,073,551 _RS15195 A4249_RS15200: A4249_RS15200 - response regulator transcription factor, at 3,073,713 to 3,074,321 _RS15200 A4249_RS15205: A4249_RS15205 - PAS-domain containing protein, at 3,074,318 to 3,077,704 _RS15205 Position (kb) 3072 3073 3074Strain fitness (log2 ratio) -2 -1 0 1 2at 3071.233 kb on + strand, within A4249_RS15190at 3071.234 kb on - strand, within A4249_RS15190at 3071.234 kb on - strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.240 kb on + strand, within A4249_RS15190at 3071.241 kb on - strand, within A4249_RS15190at 3071.241 kb on - strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.242 kb on + strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.243 kb on - strand, within A4249_RS15190at 3071.344 kb on + strand, within A4249_RS15190at 3071.344 kb on + strand, within A4249_RS15190at 3071.345 kb on - strand, within A4249_RS15190at 3071.398 kb on + strand, within A4249_RS15190at 3071.398 kb on + strand, within A4249_RS15190at 3071.398 kb on + strand, within A4249_RS15190at 3071.399 kb on - strand, within A4249_RS15190at 3071.399 kb on - strand, within A4249_RS15190at 3071.399 kb on - strand, within A4249_RS15190at 3071.405 kb on + strand, within A4249_RS15190at 3071.405 kb on + strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.406 kb on - strand, within A4249_RS15190at 3071.477 kb on - strand, within A4249_RS15190at 3071.584 kb on - strand, within A4249_RS15190at 3071.625 kb on + strand, within A4249_RS15190at 3071.625 kb on + strand, within A4249_RS15190at 3071.626 kb on - strand, within A4249_RS15190at 3071.737 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.764 kb on + strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3071.765 kb on - strand, within A4249_RS15190at 3072.106 kb on + strandat 3072.106 kb on + strandat 3072.106 kb on + strandat 3072.107 kb on - strandat 3072.107 kb on - strandat 3072.158 kb on - strandat 3072.663 kb on - strand, within A4249_RS15195at 3072.663 kb on - strand, within A4249_RS15195at 3073.138 kb on - strand, within A4249_RS15195at 3073.223 kb on + strand, within A4249_RS15195at 3073.224 kb on - strand, within A4249_RS15195at 3073.235 kb on + strand, within A4249_RS15195at 3073.236 kb on - strand, within A4249_RS15195at 3074.015 kb on + strand, within A4249_RS15200at 3074.016 kb on - strand, within A4249_RS15200at 3074.319 kb on + strandat 3074.319 kb on + strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.324 kb on - strandat 3074.324 kb on - strandat 3074.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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3,071,233 + A4249_RS15190 0.51 +0.9
3,071,234 - A4249_RS15190 0.51 +0.7
3,071,234 - A4249_RS15190 0.51 +0.5
3,071,240 + A4249_RS15190 0.51 +1.0
3,071,240 + A4249_RS15190 0.51 +0.7
3,071,240 + A4249_RS15190 0.51 +0.6
3,071,240 + A4249_RS15190 0.51 +0.8
3,071,240 + A4249_RS15190 0.51 -0.6
3,071,240 + A4249_RS15190 0.51 +0.9
3,071,241 - A4249_RS15190 0.51 -0.2
3,071,241 - A4249_RS15190 0.51 +0.2
3,071,242 + A4249_RS15190 0.51 +1.3
3,071,242 + A4249_RS15190 0.51 +1.9
3,071,242 + A4249_RS15190 0.51 +0.2
3,071,242 + A4249_RS15190 0.51 +0.8
3,071,242 + A4249_RS15190 0.51 +0.6
3,071,242 + A4249_RS15190 0.51 +0.8
3,071,242 + A4249_RS15190 0.51 +0.8
3,071,242 + A4249_RS15190 0.51 +0.7
3,071,243 - A4249_RS15190 0.51 +0.7
3,071,243 - A4249_RS15190 0.51 +0.1
3,071,243 - A4249_RS15190 0.51 +1.0
3,071,243 - A4249_RS15190 0.51 +0.9
3,071,243 - A4249_RS15190 0.51 +1.0
3,071,243 - A4249_RS15190 0.51 +0.9
3,071,243 - A4249_RS15190 0.51 +1.3
3,071,243 - A4249_RS15190 0.51 -0.2
3,071,344 + A4249_RS15190 0.56 +1.3
3,071,344 + A4249_RS15190 0.56 +0.9
3,071,345 - A4249_RS15190 0.57 +0.6
3,071,398 + A4249_RS15190 0.59 -0.2
3,071,398 + A4249_RS15190 0.59 +0.0
3,071,398 + A4249_RS15190 0.59 +1.5
3,071,399 - A4249_RS15190 0.59 +0.2
3,071,399 - A4249_RS15190 0.59 +1.0
3,071,399 - A4249_RS15190 0.59 +0.8
3,071,405 + A4249_RS15190 0.60 +0.4
3,071,405 + A4249_RS15190 0.60 -1.1
3,071,406 - A4249_RS15190 0.60 +1.2
3,071,406 - A4249_RS15190 0.60 +0.5
3,071,406 - A4249_RS15190 0.60 +0.3
3,071,406 - A4249_RS15190 0.60 +0.6
3,071,477 - A4249_RS15190 0.63 +0.6
3,071,584 - A4249_RS15190 0.69 +1.2
3,071,625 + A4249_RS15190 0.71 +0.9
3,071,625 + A4249_RS15190 0.71 +1.0
3,071,626 - A4249_RS15190 0.71 +0.3
3,071,737 + A4249_RS15190 0.77 +1.5
3,071,764 + A4249_RS15190 0.78 +0.5
3,071,764 + A4249_RS15190 0.78 +1.7
3,071,764 + A4249_RS15190 0.78 +0.9
3,071,764 + A4249_RS15190 0.78 +0.9
3,071,765 - A4249_RS15190 0.78 +0.7
3,071,765 - A4249_RS15190 0.78 +0.4
3,071,765 - A4249_RS15190 0.78 -0.5
3,071,765 - A4249_RS15190 0.78 +0.3
3,072,106 + -0.4
3,072,106 + +1.1
3,072,106 + +0.4
3,072,107 - +0.2
3,072,107 - +0.7
3,072,158 - +1.2
3,072,663 - A4249_RS15195 0.34 +0.3
3,072,663 - A4249_RS15195 0.34 -0.3
3,073,138 - A4249_RS15195 0.69 -1.0
3,073,223 + A4249_RS15195 0.76 -0.8
3,073,224 - A4249_RS15195 0.76 -0.0
3,073,235 + A4249_RS15195 0.77 +0.1
3,073,236 - A4249_RS15195 0.77 -1.4
3,074,015 + A4249_RS15200 0.50 +0.8
3,074,016 - A4249_RS15200 0.50 +0.3
3,074,319 + -0.4
3,074,319 + -1.7
3,074,320 - -1.0
3,074,320 - -2.3
3,074,320 - +1.1
3,074,320 - +0.0
3,074,320 - +0.1
3,074,320 - +0.1
3,074,323 + -1.7
3,074,323 + -1.0
3,074,323 + -0.2
3,074,323 + +0.3
3,074,323 + +0.2
3,074,324 - -1.0
3,074,324 - +0.5
3,074,324 - -0.0

Or see this region's nucleotide sequence