Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10595

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10585 and A4249_RS10590 are separated by 56 nucleotidesA4249_RS10590 and A4249_RS10595 are separated by 49 nucleotidesA4249_RS10595 and A4249_RS10600 are separated by 74 nucleotides A4249_RS10585: A4249_RS10585 - extensin family protein, at 2,126,869 to 2,127,612 _RS10585 A4249_RS10590: A4249_RS10590 - DUF2256 domain-containing protein, at 2,127,669 to 2,127,848 _RS10590 A4249_RS10595: A4249_RS10595 - RNA polymerase sigma factor RpoD, at 2,127,898 to 2,129,844 _RS10595 A4249_RS10600: A4249_RS10600 - DNA primase, at 2,129,919 to 2,131,778 _RS10600 Position (kb) 2127 2128 2129 2130Strain fitness (log2 ratio) -1 0 1 2at 2126.930 kb on + strandat 2126.931 kb on - strandat 2126.931 kb on - strandat 2126.931 kb on - strandat 2126.979 kb on + strand, within A4249_RS10585at 2126.980 kb on - strand, within A4249_RS10585at 2127.144 kb on - strand, within A4249_RS10585at 2127.414 kb on + strand, within A4249_RS10585at 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.626 kb on - strandat 2127.626 kb on - strandat 2127.626 kb on - strandat 2127.671 kb on - strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.897 kb on - strandat 2127.897 kb on - strandat 2127.897 kb on - strandat 2127.897 kb on - strandat 2129.915 kb on - strandat 2129.915 kb on - strandat 2129.921 kb on - strandat 2129.921 kb on - strandat 2129.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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2,126,930 + -0.5
2,126,931 - +0.2
2,126,931 - -0.6
2,126,931 - -0.1
2,126,979 + A4249_RS10585 0.15 +0.5
2,126,980 - A4249_RS10585 0.15 -0.3
2,127,144 - A4249_RS10585 0.37 -0.2
2,127,414 + A4249_RS10585 0.73 -0.3
2,127,625 + -1.2
2,127,625 + -0.4
2,127,625 + +1.8
2,127,625 + +0.7
2,127,625 + +0.3
2,127,625 + +0.9
2,127,625 + +0.4
2,127,626 - -0.7
2,127,626 - +1.4
2,127,626 - +0.6
2,127,671 - +0.1
2,127,896 + +0.1
2,127,896 + +0.5
2,127,896 + +0.3
2,127,896 + -0.1
2,127,896 + +0.3
2,127,896 + -0.1
2,127,896 + +0.6
2,127,897 - -0.6
2,127,897 - +0.6
2,127,897 - -1.1
2,127,897 - +0.6
2,129,915 - -0.3
2,129,915 - +0.9
2,129,921 - -0.4
2,129,921 - +0.3
2,129,921 - -0.3

Or see this region's nucleotide sequence