Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09820

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09815 and A4249_RS09820 are separated by 131 nucleotidesA4249_RS09820 and A4249_RS09825 are separated by 82 nucleotidesA4249_RS09825 and A4249_RS09830 are separated by 4 nucleotides A4249_RS09815: A4249_RS09815 - nucleoside transporter C-terminal domain-containing protein, at 1,955,700 to 1,956,974 _RS09815 A4249_RS09820: A4249_RS09820 - branched-chain amino acid aminotransferase, at 1,957,106 to 1,957,984 _RS09820 A4249_RS09825: A4249_RS09825 - response regulator transcription factor, at 1,958,067 to 1,958,804 _RS09825 A4249_RS09830: A4249_RS09830 - ATP-binding protein, at 1,958,809 to 1,960,176 _RS09830 Position (kb) 1957 1958Strain fitness (log2 ratio) -1 0 1at 1956.227 kb on - strand, within A4249_RS09815at 1956.244 kb on + strand, within A4249_RS09815at 1956.244 kb on + strand, within A4249_RS09815at 1956.245 kb on - strand, within A4249_RS09815at 1956.385 kb on + strand, within A4249_RS09815at 1956.385 kb on + strand, within A4249_RS09815at 1956.386 kb on - strand, within A4249_RS09815at 1956.386 kb on - strand, within A4249_RS09815at 1956.469 kb on + strand, within A4249_RS09815at 1956.469 kb on + strand, within A4249_RS09815at 1956.469 kb on + strand, within A4249_RS09815at 1956.469 kb on + strand, within A4249_RS09815at 1956.470 kb on - strand, within A4249_RS09815at 1956.703 kb on + strand, within A4249_RS09815at 1956.703 kb on + strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.704 kb on - strand, within A4249_RS09815at 1956.728 kb on - strand, within A4249_RS09815at 1956.728 kb on - strand, within A4249_RS09815at 1956.974 kb on + strandat 1956.974 kb on + strandat 1956.975 kb on - strandat 1956.975 kb on - strandat 1956.975 kb on - strandat 1956.975 kb on - strandat 1957.012 kb on + strandat 1957.013 kb on - strandat 1957.107 kb on + strandat 1957.107 kb on + strandat 1957.107 kb on + strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1957.108 kb on - strandat 1958.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,956,227 - A4249_RS09815 0.41 +1.5
1,956,244 + A4249_RS09815 0.43 +0.5
1,956,244 + A4249_RS09815 0.43 +0.6
1,956,245 - A4249_RS09815 0.43 -0.3
1,956,385 + A4249_RS09815 0.54 -0.3
1,956,385 + A4249_RS09815 0.54 +1.4
1,956,386 - A4249_RS09815 0.54 -0.9
1,956,386 - A4249_RS09815 0.54 -0.1
1,956,469 + A4249_RS09815 0.60 +0.5
1,956,469 + A4249_RS09815 0.60 +0.7
1,956,469 + A4249_RS09815 0.60 +0.3
1,956,469 + A4249_RS09815 0.60 +0.7
1,956,470 - A4249_RS09815 0.60 +0.9
1,956,703 + A4249_RS09815 0.79 +1.5
1,956,703 + A4249_RS09815 0.79 -0.4
1,956,704 - A4249_RS09815 0.79 -0.4
1,956,704 - A4249_RS09815 0.79 -0.0
1,956,704 - A4249_RS09815 0.79 +0.8
1,956,704 - A4249_RS09815 0.79 -0.2
1,956,704 - A4249_RS09815 0.79 +1.4
1,956,704 - A4249_RS09815 0.79 +0.1
1,956,704 - A4249_RS09815 0.79 +1.0
1,956,728 - A4249_RS09815 0.81 -0.1
1,956,728 - A4249_RS09815 0.81 +0.3
1,956,974 + -0.9
1,956,974 + -0.5
1,956,975 - -0.5
1,956,975 - -1.7
1,956,975 - +0.7
1,956,975 - -0.3
1,957,012 + -0.8
1,957,013 - -0.4
1,957,107 + +0.2
1,957,107 + +0.5
1,957,107 + -0.6
1,957,108 - +1.5
1,957,108 - -0.2
1,957,108 - +0.6
1,957,108 - +0.1
1,957,108 - +0.8
1,957,108 - +0.3
1,957,108 - +0.2
1,957,108 - -0.7
1,958,017 - +0.9

Or see this region's nucleotide sequence