Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09445

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09435 and A4249_RS09440 are separated by 328 nucleotidesA4249_RS09440 and A4249_RS09445 overlap by 4 nucleotidesA4249_RS09445 and A4249_RS09450 are separated by 22 nucleotides A4249_RS09435: A4249_RS09435 - TonB-dependent receptor, at 1,884,629 to 1,886,530 _RS09435 A4249_RS09440: A4249_RS09440 - metalloregulator ArsR/SmtB family transcription factor, at 1,886,859 to 1,887,164 _RS09440 A4249_RS09445: A4249_RS09445 - SdpI family protein, at 1,887,161 to 1,887,841 _RS09445 A4249_RS09450: A4249_RS09450 - alpha/beta hydrolase, at 1,887,864 to 1,888,805 _RS09450 Position (kb) 1887 1888Strain fitness (log2 ratio) -2 -1 0 1at 1886.163 kb on - strand, within A4249_RS09435at 1886.340 kb on + strandat 1886.341 kb on - strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.352 kb on + strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.353 kb on - strandat 1886.370 kb on + strandat 1886.370 kb on + strandat 1886.371 kb on - strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.394 kb on + strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.395 kb on - strandat 1886.502 kb on + strandat 1886.502 kb on + strandat 1886.502 kb on + strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.503 kb on - strandat 1886.821 kb on + strandat 1886.822 kb on - strandat 1886.822 kb on - strandat 1887.188 kb on + strandat 1887.189 kb on - strandat 1887.189 kb on - strandat 1887.189 kb on - strandat 1887.189 kb on - strandat 1887.189 kb on - strandat 1887.189 kb on - strandat 1887.189 kb on - strandat 1887.632 kb on + strand, within A4249_RS09445at 1887.632 kb on + strand, within A4249_RS09445at 1887.633 kb on - strand, within A4249_RS09445at 1887.633 kb on - strand, within A4249_RS09445at 1888.068 kb on + strand, within A4249_RS09450at 1888.068 kb on + strand, within A4249_RS09450at 1888.068 kb on + strand, within A4249_RS09450at 1888.068 kb on + strand, within A4249_RS09450at 1888.068 kb on + strand, within A4249_RS09450at 1888.068 kb on + strand, within A4249_RS09450at 1888.069 kb on - strand, within A4249_RS09450at 1888.069 kb on - strand, within A4249_RS09450at 1888.188 kb on + strand, within A4249_RS09450at 1888.509 kb on + strand, within A4249_RS09450at 1888.510 kb on - strand, within A4249_RS09450at 1888.510 kb on - strand, within A4249_RS09450at 1888.557 kb on + strand, within A4249_RS09450at 1888.725 kb on + strandat 1888.725 kb on + strandat 1888.725 kb on + strandat 1888.725 kb on + strandat 1888.725 kb on + strandat 1888.725 kb on + strandat 1888.726 kb on - strandat 1888.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,886,163 - A4249_RS09435 0.81 +1.2
1,886,340 + -0.4
1,886,341 - +0.0
1,886,352 + +0.4
1,886,352 + -0.6
1,886,352 + -0.4
1,886,352 + -1.7
1,886,352 + -0.5
1,886,352 + -0.0
1,886,352 + -1.0
1,886,352 + +1.3
1,886,352 + -0.1
1,886,353 - -0.5
1,886,353 - +0.5
1,886,353 - +0.9
1,886,353 - -0.4
1,886,353 - -0.1
1,886,353 - -0.8
1,886,353 - +0.2
1,886,353 - -0.5
1,886,370 + +1.7
1,886,370 + +0.2
1,886,371 - -1.0
1,886,394 + +1.7
1,886,394 + +0.7
1,886,394 + +0.1
1,886,394 + +1.2
1,886,394 + +0.3
1,886,394 + -0.9
1,886,394 + -2.0
1,886,394 + -0.1
1,886,394 + +0.7
1,886,395 - -0.2
1,886,395 - -1.1
1,886,395 - +0.8
1,886,395 - -0.3
1,886,395 - -1.1
1,886,395 - -0.3
1,886,395 - +0.7
1,886,395 - -0.0
1,886,395 - +0.2
1,886,395 - +1.5
1,886,395 - -0.3
1,886,395 - -0.1
1,886,395 - -0.9
1,886,395 - -0.6
1,886,395 - +0.4
1,886,395 - -0.3
1,886,395 - +0.5
1,886,395 - +0.6
1,886,502 + -0.7
1,886,502 + -0.3
1,886,502 + +0.3
1,886,503 - +1.7
1,886,503 - +0.1
1,886,503 - -0.2
1,886,503 - +0.2
1,886,503 - -0.6
1,886,503 - -0.5
1,886,503 - +0.4
1,886,503 - +0.1
1,886,821 + -0.7
1,886,822 - +0.9
1,886,822 - -0.0
1,887,188 + -0.5
1,887,189 - +0.3
1,887,189 - -0.3
1,887,189 - -0.0
1,887,189 - -0.6
1,887,189 - +1.4
1,887,189 - -1.6
1,887,189 - -1.0
1,887,632 + A4249_RS09445 0.69 -0.1
1,887,632 + A4249_RS09445 0.69 +0.1
1,887,633 - A4249_RS09445 0.69 -1.0
1,887,633 - A4249_RS09445 0.69 -1.3
1,888,068 + A4249_RS09450 0.22 -0.5
1,888,068 + A4249_RS09450 0.22 -0.4
1,888,068 + A4249_RS09450 0.22 +0.2
1,888,068 + A4249_RS09450 0.22 -0.4
1,888,068 + A4249_RS09450 0.22 -0.5
1,888,068 + A4249_RS09450 0.22 -0.9
1,888,069 - A4249_RS09450 0.22 -0.7
1,888,069 - A4249_RS09450 0.22 -1.1
1,888,188 + A4249_RS09450 0.34 -0.6
1,888,509 + A4249_RS09450 0.68 +0.3
1,888,510 - A4249_RS09450 0.69 +0.6
1,888,510 - A4249_RS09450 0.69 +1.0
1,888,557 + A4249_RS09450 0.74 +0.3
1,888,725 + -0.6
1,888,725 + +0.2
1,888,725 + -0.2
1,888,725 + +1.3
1,888,725 + -0.0
1,888,725 + -0.9
1,888,726 - +1.5
1,888,804 - -0.3

Or see this region's nucleotide sequence