Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08030

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08020 and A4249_RS08025 are separated by 26 nucleotidesA4249_RS08025 and A4249_RS08030 overlap by 4 nucleotidesA4249_RS08030 and A4249_RS08035 are separated by 206 nucleotides A4249_RS08020: A4249_RS08020 - EF-hand domain-containing protein, at 1,604,441 to 1,604,779 _RS08020 A4249_RS08025: A4249_RS08025 - DUF2155 domain-containing protein, at 1,604,806 to 1,605,459 _RS08025 A4249_RS08030: A4249_RS08030 - NADH:ubiquinone oxidoreductase subunit NDUFA12, at 1,605,456 to 1,605,848 _RS08030 A4249_RS08035: A4249_RS08035 - TSCPD domain-containing protein, at 1,606,055 to 1,608,592 _RS08035 Position (kb) 1605 1606Strain fitness (log2 ratio) -2 -1 0 1 2at 1604.649 kb on - strand, within A4249_RS08020at 1604.704 kb on + strand, within A4249_RS08020at 1604.705 kb on - strand, within A4249_RS08020at 1604.705 kb on - strand, within A4249_RS08020at 1604.801 kb on + strandat 1604.801 kb on + strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.815 kb on - strandat 1604.837 kb on + strandat 1604.945 kb on + strand, within A4249_RS08025at 1604.945 kb on + strand, within A4249_RS08025at 1604.945 kb on + strand, within A4249_RS08025at 1604.946 kb on - strand, within A4249_RS08025at 1604.946 kb on - strand, within A4249_RS08025at 1604.946 kb on - strand, within A4249_RS08025at 1605.226 kb on + strand, within A4249_RS08025at 1605.478 kb on + strandat 1605.479 kb on - strandat 1605.909 kb on - strandat 1605.961 kb on - strandat 1606.021 kb on + strandat 1606.680 kb on + strand, within A4249_RS08035at 1606.681 kb on - strand, within A4249_RS08035

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,604,649 - A4249_RS08020 0.61 -0.1
1,604,704 + A4249_RS08020 0.78 -0.5
1,604,705 - A4249_RS08020 0.78 +0.7
1,604,705 - A4249_RS08020 0.78 +1.1
1,604,801 + -0.2
1,604,801 + +1.0
1,604,802 - -0.3
1,604,802 - -0.3
1,604,802 - -0.6
1,604,802 - -2.1
1,604,802 - +0.6
1,604,802 - -0.6
1,604,802 - -0.9
1,604,815 - +1.6
1,604,837 + +0.4
1,604,945 + A4249_RS08025 0.21 +1.1
1,604,945 + A4249_RS08025 0.21 +0.1
1,604,945 + A4249_RS08025 0.21 +0.6
1,604,946 - A4249_RS08025 0.21 +1.9
1,604,946 - A4249_RS08025 0.21 -0.2
1,604,946 - A4249_RS08025 0.21 +2.6
1,605,226 + A4249_RS08025 0.64 +1.9
1,605,478 + -0.0
1,605,479 - +0.2
1,605,909 - -0.5
1,605,961 - +0.3
1,606,021 + +1.0
1,606,680 + A4249_RS08035 0.25 -0.1
1,606,681 - A4249_RS08035 0.25 +0.2

Or see this region's nucleotide sequence