Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07985

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07975 and A4249_RS07980 are separated by 115 nucleotidesA4249_RS07980 and A4249_RS07985 overlap by 4 nucleotidesA4249_RS07985 and A4249_RS07990 are separated by 0 nucleotidesA4249_RS07990 and A4249_RS07995 are separated by 350 nucleotides A4249_RS07975: A4249_RS07975 - thiazole synthase, at 1,598,211 to 1,598,993 _RS07975 A4249_RS07980: A4249_RS07980 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 1,599,109 to 1,599,354 _RS07980 A4249_RS07985: A4249_RS07985 - type II toxin-antitoxin system VapC family toxin, at 1,599,351 to 1,599,737 _RS07985 A4249_RS07990: A4249_RS07990 - sulfur carrier protein ThiS, at 1,599,738 to 1,599,938 _RS07990 A4249_RS07995: A4249_RS07995 - type II 3-dehydroquinate dehydratase, at 1,600,289 to 1,600,735 _RS07995 Position (kb) 1599 1600Strain fitness (log2 ratio) -2 -1 0 1 2at 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.365 kb on - strandat 1599.365 kb on - strandat 1599.365 kb on - strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.475 kb on + strand, within A4249_RS07985at 1599.476 kb on - strand, within A4249_RS07985at 1599.543 kb on + strand, within A4249_RS07985at 1599.543 kb on + strand, within A4249_RS07985at 1599.544 kb on - strand, within A4249_RS07985at 1599.544 kb on - strand, within A4249_RS07985at 1599.565 kb on - strand, within A4249_RS07985at 1599.650 kb on - strand, within A4249_RS07985at 1599.711 kb on + strandat 1599.711 kb on + strandat 1599.711 kb on + strandat 1599.712 kb on - strandat 1599.712 kb on - strandat 1599.712 kb on - strandat 1599.984 kb on + strandat 1599.984 kb on + strandat 1599.984 kb on + strandat 1599.985 kb on - strandat 1599.985 kb on - strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.189 kb on - strandat 1600.189 kb on - strandat 1600.242 kb on + strandat 1600.364 kb on + strand, within A4249_RS07995at 1600.364 kb on + strand, within A4249_RS07995at 1600.364 kb on + strand, within A4249_RS07995at 1600.531 kb on + strand, within A4249_RS07995at 1600.634 kb on + strand, within A4249_RS07995at 1600.634 kb on + strand, within A4249_RS07995at 1600.634 kb on + strand, within A4249_RS07995

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,599,364 + +0.0
1,599,364 + +0.0
1,599,364 + -0.6
1,599,364 + +0.6
1,599,364 + -0.5
1,599,365 - -1.6
1,599,365 - -0.7
1,599,365 - -1.1
1,599,368 + -1.0
1,599,368 + -0.4
1,599,368 + +1.2
1,599,368 + -1.1
1,599,368 + +0.3
1,599,368 + -0.4
1,599,368 + +0.7
1,599,369 - -0.6
1,599,369 - +0.3
1,599,369 - +1.7
1,599,369 - +1.7
1,599,369 - -0.1
1,599,369 - -0.6
1,599,475 + A4249_RS07985 0.32 -0.8
1,599,476 - A4249_RS07985 0.32 -0.7
1,599,543 + A4249_RS07985 0.50 -1.5
1,599,543 + A4249_RS07985 0.50 +0.6
1,599,544 - A4249_RS07985 0.50 -0.0
1,599,544 - A4249_RS07985 0.50 -0.0
1,599,565 - A4249_RS07985 0.55 +0.8
1,599,650 - A4249_RS07985 0.77 -0.2
1,599,711 + +0.9
1,599,711 + -0.7
1,599,711 + +0.0
1,599,712 - +0.8
1,599,712 - -1.4
1,599,712 - +0.1
1,599,984 + +0.8
1,599,984 + +2.0
1,599,984 + -0.4
1,599,985 - -0.8
1,599,985 - -1.9
1,600,188 + -0.6
1,600,188 + +0.4
1,600,188 + -0.6
1,600,188 + +0.1
1,600,188 + -2.5
1,600,189 - -0.7
1,600,189 - -1.0
1,600,242 + +0.1
1,600,364 + A4249_RS07995 0.17 -1.5
1,600,364 + A4249_RS07995 0.17 +0.1
1,600,364 + A4249_RS07995 0.17 +1.1
1,600,531 + A4249_RS07995 0.54 -1.5
1,600,634 + A4249_RS07995 0.77 +1.3
1,600,634 + A4249_RS07995 0.77 +0.9
1,600,634 + A4249_RS07995 0.77 +0.3

Or see this region's nucleotide sequence