Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06830

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06820 and A4249_RS06825 are separated by 75 nucleotidesA4249_RS06825 and A4249_RS06830 are separated by 44 nucleotidesA4249_RS06830 and A4249_RS06835 are separated by 320 nucleotidesA4249_RS06835 and A4249_RS06840 are separated by 90 nucleotides A4249_RS06820: A4249_RS06820 - SPOR domain-containing protein, at 1,388,863 to 1,389,522 _RS06820 A4249_RS06825: A4249_RS06825 - pantoate--beta-alanine ligase, at 1,389,598 to 1,390,458 _RS06825 A4249_RS06830: A4249_RS06830 - chorismate mutase, at 1,390,503 to 1,391,225 _RS06830 A4249_RS06835: A4249_RS06835 - prephenate dehydratase domain-containing protein, at 1,391,546 to 1,392,121 _RS06835 A4249_RS06840: A4249_RS06840 - 3-deoxy-7-phosphoheptulonate synthase class II, at 1,392,212 to 1,393,582 _RS06840 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2at 1389.522 kb on + strandat 1389.522 kb on + strandat 1389.522 kb on + strandat 1389.522 kb on + strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.523 kb on - strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.534 kb on + strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.535 kb on - strandat 1389.573 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1389.603 kb on - strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.446 kb on + strandat 1390.447 kb on - strandat 1390.498 kb on + strandat 1390.498 kb on + strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.499 kb on - strandat 1390.900 kb on + strand, within A4249_RS06830at 1390.900 kb on + strand, within A4249_RS06830at 1390.900 kb on + strand, within A4249_RS06830at 1390.900 kb on + strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1390.901 kb on - strand, within A4249_RS06830at 1391.252 kb on + strandat 1391.252 kb on + strandat 1391.253 kb on - strandat 1391.253 kb on - strandat 1391.294 kb on - strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.307 kb on + strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.308 kb on - strandat 1391.393 kb on + strandat 1391.412 kb on - strandat 1391.412 kb on - strandat 1391.522 kb on + strandat 1391.523 kb on - strandat 1391.631 kb on + strand, within A4249_RS06835at 1391.631 kb on + strand, within A4249_RS06835at 1391.631 kb on + strand, within A4249_RS06835at 1391.631 kb on + strand, within A4249_RS06835at 1391.631 kb on + strand, within A4249_RS06835at 1391.632 kb on - strand, within A4249_RS06835at 1391.632 kb on - strand, within A4249_RS06835at 1391.942 kb on + strand, within A4249_RS06835at 1392.075 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.113 kb on + strandat 1392.114 kb on - strandat 1392.114 kb on - strandat 1392.114 kb on - strandat 1392.114 kb on - strandat 1392.114 kb on - strandat 1392.114 kb on - strandat 1392.114 kb on - strandat 1392.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,389,522 + -0.3
1,389,522 + +0.2
1,389,522 + -1.8
1,389,522 + -0.2
1,389,523 - -0.4
1,389,523 - -0.1
1,389,523 - -0.7
1,389,523 - -1.5
1,389,523 - +0.0
1,389,523 - +2.7
1,389,534 + +0.6
1,389,534 + +0.3
1,389,534 + -0.5
1,389,534 + -0.1
1,389,534 + -0.9
1,389,534 + +0.1
1,389,534 + -0.5
1,389,535 - +0.5
1,389,535 - +0.4
1,389,535 - +0.1
1,389,535 - -1.1
1,389,535 - -0.8
1,389,535 - -0.4
1,389,535 - +0.4
1,389,535 - +0.2
1,389,535 - -0.3
1,389,573 - +2.5
1,389,603 - +1.3
1,389,603 - +0.3
1,389,603 - +0.9
1,389,603 - +0.2
1,389,603 - +0.6
1,390,446 + +1.1
1,390,446 + +0.5
1,390,446 + +0.3
1,390,446 + +0.2
1,390,446 + -0.4
1,390,446 + +0.3
1,390,446 + +1.5
1,390,446 + +0.7
1,390,446 + +0.3
1,390,447 - +0.1
1,390,498 + +0.4
1,390,498 + +1.4
1,390,499 - -0.1
1,390,499 - -0.9
1,390,499 - -1.3
1,390,499 - -0.0
1,390,499 - +1.1
1,390,499 - +0.7
1,390,900 + A4249_RS06830 0.55 +0.3
1,390,900 + A4249_RS06830 0.55 +0.8
1,390,900 + A4249_RS06830 0.55 -1.8
1,390,900 + A4249_RS06830 0.55 +0.6
1,390,901 - A4249_RS06830 0.55 +0.3
1,390,901 - A4249_RS06830 0.55 -1.4
1,390,901 - A4249_RS06830 0.55 -0.1
1,390,901 - A4249_RS06830 0.55 +0.4
1,391,252 + +0.4
1,391,252 + -0.5
1,391,253 - -0.9
1,391,253 - -0.8
1,391,294 - -0.9
1,391,307 + -0.2
1,391,307 + +0.3
1,391,307 + -1.8
1,391,307 + +2.1
1,391,307 + +0.6
1,391,307 + +0.3
1,391,307 + +0.1
1,391,307 + +0.2
1,391,307 + +0.7
1,391,307 + -1.1
1,391,308 - +0.6
1,391,308 - -1.2
1,391,308 - +1.3
1,391,308 - -1.0
1,391,308 - +1.9
1,391,308 - -0.0
1,391,308 - +0.2
1,391,308 - +1.0
1,391,308 - +0.4
1,391,308 - +0.8
1,391,308 - +0.3
1,391,308 - +0.1
1,391,308 - +0.3
1,391,393 + +0.5
1,391,412 - +0.1
1,391,412 - -0.4
1,391,522 + -0.0
1,391,523 - -1.1
1,391,631 + A4249_RS06835 0.15 -0.1
1,391,631 + A4249_RS06835 0.15 +0.3
1,391,631 + A4249_RS06835 0.15 +0.4
1,391,631 + A4249_RS06835 0.15 +0.9
1,391,631 + A4249_RS06835 0.15 +0.1
1,391,632 - A4249_RS06835 0.15 -0.3
1,391,632 - A4249_RS06835 0.15 -0.3
1,391,942 + A4249_RS06835 0.69 -0.1
1,392,075 + -0.2
1,392,113 + +1.3
1,392,113 + -0.1
1,392,113 + +0.3
1,392,113 + +0.5
1,392,113 + +0.1
1,392,113 + -0.2
1,392,113 + -0.9
1,392,113 + +0.1
1,392,113 + -0.8
1,392,114 - +0.0
1,392,114 - -0.1
1,392,114 - -0.2
1,392,114 - +0.2
1,392,114 - -0.5
1,392,114 - +0.6
1,392,114 - -0.4
1,392,213 + +1.2

Or see this region's nucleotide sequence