Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06475

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06460 and A4249_RS17035 are separated by 280 nucleotidesA4249_RS17035 and A4249_RS06465 overlap by 4 nucleotidesA4249_RS06465 and A4249_RS06470 overlap by 4 nucleotidesA4249_RS06470 and A4249_RS06475 are separated by 71 nucleotidesA4249_RS06475 and A4249_RS06480 are separated by 194 nucleotidesA4249_RS06480 and A4249_RS06485 are separated by 3 nucleotides A4249_RS06460: A4249_RS06460 - endopeptidase La, at 1,315,432 to 1,317,828 _RS06460 A4249_RS17035: A4249_RS17035 - hypothetical protein, at 1,318,109 to 1,318,237 _RS17035 A4249_RS06465: A4249_RS06465 - hypothetical protein, at 1,318,234 to 1,318,443 _RS06465 A4249_RS06470: A4249_RS06470 - hypothetical protein, at 1,318,440 to 1,318,634 _RS06470 A4249_RS06475: A4249_RS06475 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,318,706 to 1,319,974 _RS06475 A4249_RS06480: A4249_RS06480 - HAD-IB family hydrolase, at 1,320,169 to 1,320,816 _RS06480 A4249_RS06485: A4249_RS06485 - hypothetical protein, at 1,320,820 to 1,321,140 _RS06485 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -2 -1 0 1 2at 1317.835 kb on + strandat 1317.835 kb on + strandat 1317.835 kb on + strandat 1317.836 kb on - strandat 1317.836 kb on - strandat 1317.836 kb on - strandat 1317.836 kb on - strandat 1317.836 kb on - strandat 1317.939 kb on + strandat 1317.939 kb on + strandat 1317.939 kb on + strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1317.940 kb on - strandat 1318.025 kb on + strandat 1318.025 kb on + strandat 1318.026 kb on - strandat 1318.036 kb on + strandat 1318.036 kb on + strandat 1318.037 kb on - strandat 1318.037 kb on - strandat 1318.069 kb on - strandat 1318.288 kb on + strand, within A4249_RS06465at 1318.288 kb on + strand, within A4249_RS06465at 1318.288 kb on + strand, within A4249_RS06465at 1318.288 kb on + strand, within A4249_RS06465at 1318.289 kb on - strand, within A4249_RS06465at 1318.444 kb on + strandat 1318.444 kb on + strandat 1318.444 kb on + strandat 1318.733 kb on - strandat 1318.746 kb on + strandat 1318.746 kb on + strandat 1318.747 kb on - strandat 1318.747 kb on - strandat 1319.975 kb on - strandat 1320.183 kb on + strandat 1320.183 kb on + strandat 1320.183 kb on + strandat 1320.197 kb on + strandat 1320.198 kb on - strandat 1320.707 kb on - strand, within A4249_RS06480at 1320.821 kb on + strandat 1320.821 kb on + strandat 1320.821 kb on + strandat 1320.822 kb on - strandat 1320.822 kb on - strandat 1320.822 kb on - strandat 1320.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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1,317,835 + -0.6
1,317,835 + -1.5
1,317,835 + +2.2
1,317,836 - +1.4
1,317,836 - -0.2
1,317,836 - -0.3
1,317,836 - -0.8
1,317,836 - +0.6
1,317,939 + +0.3
1,317,939 + +0.2
1,317,939 + +2.4
1,317,940 - -0.5
1,317,940 - -0.0
1,317,940 - +1.7
1,317,940 - -2.0
1,317,940 - +0.6
1,317,940 - -0.9
1,317,940 - -0.4
1,317,940 - -0.3
1,317,940 - +1.2
1,318,025 + -0.9
1,318,025 + -0.1
1,318,026 - -0.1
1,318,036 + -1.0
1,318,036 + +0.0
1,318,037 - -0.5
1,318,037 - +0.4
1,318,069 - -0.2
1,318,288 + A4249_RS06465 0.26 -1.0
1,318,288 + A4249_RS06465 0.26 -0.7
1,318,288 + A4249_RS06465 0.26 -0.0
1,318,288 + A4249_RS06465 0.26 -1.7
1,318,289 - A4249_RS06465 0.26 +0.3
1,318,444 + -1.0
1,318,444 + +0.4
1,318,444 + -0.0
1,318,733 - +2.1
1,318,746 + +1.3
1,318,746 + +1.2
1,318,747 - +1.2
1,318,747 - +1.7
1,319,975 - -0.9
1,320,183 + +0.3
1,320,183 + -0.2
1,320,183 + -1.7
1,320,197 + -1.2
1,320,198 - -0.5
1,320,707 - A4249_RS06480 0.83 +0.1
1,320,821 + -1.0
1,320,821 + +0.7
1,320,821 + -0.9
1,320,822 - +0.1
1,320,822 - -1.8
1,320,822 - -0.7
1,320,822 - -0.5

Or see this region's nucleotide sequence