Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02550

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02540 and A4249_RS02545 overlap by 4 nucleotidesA4249_RS02545 and A4249_RS02550 are separated by 103 nucleotidesA4249_RS02550 and A4249_RS02555 overlap by 4 nucleotidesA4249_RS02555 and A4249_RS02560 are separated by 194 nucleotides A4249_RS02540: A4249_RS02540 - LysR family transcriptional regulator, at 544,364 to 545,239 _RS02540 A4249_RS02545: A4249_RS02545 - oxygen-dependent coproporphyrinogen oxidase, at 545,236 to 546,117 _RS02545 A4249_RS02550: A4249_RS02550 - dipeptidase, at 546,221 to 547,480 _RS02550 A4249_RS02555: A4249_RS02555 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 547,477 to 547,926 _RS02555 A4249_RS02560: A4249_RS02560 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 548,121 to 548,678 _RS02560 Position (kb) 546 547 548Strain fitness (log2 ratio) -2 -1 0 1 2at 545.238 kb on - strandat 546.168 kb on + strandat 546.168 kb on + strandat 546.168 kb on + strandat 546.168 kb on + strandat 546.169 kb on - strandat 546.169 kb on - strandat 546.169 kb on - strandat 546.392 kb on + strand, within A4249_RS02550at 546.393 kb on - strand, within A4249_RS02550at 546.393 kb on - strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.494 kb on + strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.495 kb on - strand, within A4249_RS02550at 546.586 kb on + strand, within A4249_RS02550at 546.587 kb on - strand, within A4249_RS02550at 546.587 kb on - strand, within A4249_RS02550at 546.713 kb on + strand, within A4249_RS02550at 546.714 kb on - strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.731 kb on + strand, within A4249_RS02550at 546.732 kb on - strand, within A4249_RS02550at 546.732 kb on - strand, within A4249_RS02550at 546.732 kb on - strand, within A4249_RS02550at 546.732 kb on - strand, within A4249_RS02550at 547.267 kb on + strand, within A4249_RS02550at 547.307 kb on + strand, within A4249_RS02550at 547.307 kb on + strand, within A4249_RS02550at 547.308 kb on - strand, within A4249_RS02550at 547.479 kb on - strandat 547.604 kb on + strand, within A4249_RS02555at 547.604 kb on + strand, within A4249_RS02555at 547.604 kb on + strand, within A4249_RS02555at 547.605 kb on - strand, within A4249_RS02555at 547.605 kb on - strand, within A4249_RS02555at 547.605 kb on - strand, within A4249_RS02555at 547.605 kb on - strand, within A4249_RS02555at 547.645 kb on - strand, within A4249_RS02555at 547.695 kb on + strand, within A4249_RS02555at 547.695 kb on + strand, within A4249_RS02555at 547.695 kb on + strand, within A4249_RS02555at 547.695 kb on + strand, within A4249_RS02555at 547.695 kb on + strand, within A4249_RS02555at 547.929 kb on + strandat 547.929 kb on + strandat 547.929 kb on + strandat 547.929 kb on + strandat 547.929 kb on + strandat 547.929 kb on + strandat 547.930 kb on - strandat 547.930 kb on - strandat 547.930 kb on - strandat 547.930 kb on - strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.941 kb on + strandat 547.942 kb on - strandat 547.942 kb on - strandat 547.942 kb on - strandat 547.942 kb on - strandat 548.141 kb on + strandat 548.192 kb on + strand, within A4249_RS02560at 548.192 kb on + strand, within A4249_RS02560at 548.192 kb on + strand, within A4249_RS02560at 548.192 kb on + strand, within A4249_RS02560at 548.192 kb on + strand, within A4249_RS02560at 548.193 kb on - strand, within A4249_RS02560at 548.193 kb on - strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.196 kb on + strand, within A4249_RS02560at 548.197 kb on - strand, within A4249_RS02560at 548.197 kb on - strand, within A4249_RS02560at 548.197 kb on - strand, within A4249_RS02560at 548.197 kb on - strand, within A4249_RS02560at 548.197 kb on - strand, within A4249_RS02560at 548.197 kb on - strand, within A4249_RS02560at 548.280 kb on - strand, within A4249_RS02560at 548.280 kb on - strand, within A4249_RS02560

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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545,238 - -0.5
546,168 + +0.8
546,168 + -0.1
546,168 + -0.3
546,168 + -0.3
546,169 - -0.9
546,169 - -0.8
546,169 - +0.6
546,392 + A4249_RS02550 0.14 -0.6
546,393 - A4249_RS02550 0.14 -1.1
546,393 - A4249_RS02550 0.14 -0.4
546,494 + A4249_RS02550 0.22 +2.2
546,494 + A4249_RS02550 0.22 -2.1
546,494 + A4249_RS02550 0.22 -0.6
546,494 + A4249_RS02550 0.22 -0.5
546,494 + A4249_RS02550 0.22 -0.6
546,494 + A4249_RS02550 0.22 +0.6
546,494 + A4249_RS02550 0.22 -0.9
546,495 - A4249_RS02550 0.22 +1.0
546,495 - A4249_RS02550 0.22 +0.2
546,495 - A4249_RS02550 0.22 -1.1
546,495 - A4249_RS02550 0.22 +0.3
546,495 - A4249_RS02550 0.22 -0.4
546,495 - A4249_RS02550 0.22 +0.3
546,495 - A4249_RS02550 0.22 +0.3
546,495 - A4249_RS02550 0.22 +0.6
546,495 - A4249_RS02550 0.22 -0.1
546,586 + A4249_RS02550 0.29 -1.6
546,587 - A4249_RS02550 0.29 -0.9
546,587 - A4249_RS02550 0.29 -0.7
546,713 + A4249_RS02550 0.39 +0.1
546,714 - A4249_RS02550 0.39 +0.3
546,731 + A4249_RS02550 0.40 -0.8
546,731 + A4249_RS02550 0.40 -1.2
546,731 + A4249_RS02550 0.40 -1.0
546,731 + A4249_RS02550 0.40 -1.2
546,731 + A4249_RS02550 0.40 -0.5
546,731 + A4249_RS02550 0.40 -0.7
546,731 + A4249_RS02550 0.40 +0.6
546,731 + A4249_RS02550 0.40 +0.3
546,732 - A4249_RS02550 0.41 -2.2
546,732 - A4249_RS02550 0.41 -0.1
546,732 - A4249_RS02550 0.41 -0.4
546,732 - A4249_RS02550 0.41 +0.6
547,267 + A4249_RS02550 0.83 -0.1
547,307 + A4249_RS02550 0.86 -1.4
547,307 + A4249_RS02550 0.86 -2.3
547,308 - A4249_RS02550 0.86 -0.0
547,479 - +0.1
547,604 + A4249_RS02555 0.28 +0.3
547,604 + A4249_RS02555 0.28 +0.9
547,604 + A4249_RS02555 0.28 -1.5
547,605 - A4249_RS02555 0.28 -0.3
547,605 - A4249_RS02555 0.28 +0.4
547,605 - A4249_RS02555 0.28 +0.6
547,605 - A4249_RS02555 0.28 +0.0
547,645 - A4249_RS02555 0.37 -0.8
547,695 + A4249_RS02555 0.48 -0.5
547,695 + A4249_RS02555 0.48 +0.3
547,695 + A4249_RS02555 0.48 +0.7
547,695 + A4249_RS02555 0.48 +0.4
547,695 + A4249_RS02555 0.48 -1.4
547,929 + -0.5
547,929 + +0.0
547,929 + -0.7
547,929 + +0.5
547,929 + -0.5
547,929 + -0.1
547,930 - -1.3
547,930 - -1.2
547,930 - +1.6
547,930 - -1.0
547,941 + -0.4
547,941 + +0.1
547,941 + -1.2
547,941 + -1.4
547,941 + +0.4
547,941 + +1.6
547,941 + -0.4
547,941 + -0.4
547,942 - +0.2
547,942 - -1.0
547,942 - -0.2
547,942 - -0.1
548,141 + -0.3
548,192 + A4249_RS02560 0.13 +0.8
548,192 + A4249_RS02560 0.13 -1.3
548,192 + A4249_RS02560 0.13 -1.1
548,192 + A4249_RS02560 0.13 +0.3
548,192 + A4249_RS02560 0.13 +0.4
548,193 - A4249_RS02560 0.13 +0.9
548,193 - A4249_RS02560 0.13 -1.2
548,196 + A4249_RS02560 0.13 -1.3
548,196 + A4249_RS02560 0.13 +1.0
548,196 + A4249_RS02560 0.13 +0.1
548,196 + A4249_RS02560 0.13 -0.7
548,196 + A4249_RS02560 0.13 -0.1
548,196 + A4249_RS02560 0.13 -0.1
548,196 + A4249_RS02560 0.13 +0.1
548,196 + A4249_RS02560 0.13 -0.2
548,197 - A4249_RS02560 0.14 -0.4
548,197 - A4249_RS02560 0.14 +2.1
548,197 - A4249_RS02560 0.14 +0.4
548,197 - A4249_RS02560 0.14 +0.9
548,197 - A4249_RS02560 0.14 +0.4
548,197 - A4249_RS02560 0.14 +0.6
548,280 - A4249_RS02560 0.28 +1.1
548,280 - A4249_RS02560 0.28 +0.3

Or see this region's nucleotide sequence