Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00160

Experiment: Hypoxanthine 0.7347 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00150 and A4249_RS00155 are separated by 64 nucleotidesA4249_RS00155 and A4249_RS00160 are separated by 36 nucleotidesA4249_RS00160 and A4249_RS00165 overlap by 1 nucleotidesA4249_RS00165 and A4249_RS00170 are separated by 103 nucleotides A4249_RS00150: A4249_RS00150 - pitrilysin family protein, at 24,967 to 26,181 _RS00150 A4249_RS00155: A4249_RS00155 - NAD(P)H-dependent oxidoreductase, at 26,246 to 26,800 _RS00155 A4249_RS00160: A4249_RS00160 - NADP-dependent oxidoreductase, at 26,837 to 27,841 _RS00160 A4249_RS00165: A4249_RS00165 - SDR family oxidoreductase, at 27,841 to 28,629 _RS00165 A4249_RS00170: A4249_RS00170 - TetR/AcrR family transcriptional regulator, at 28,733 to 29,302 _RS00170 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 25.926 kb on + strand, within A4249_RS00150at 25.927 kb on - strand, within A4249_RS00150at 25.927 kb on - strand, within A4249_RS00150at 26.088 kb on - strandat 26.208 kb on + strandat 26.294 kb on + strandat 26.381 kb on + strand, within A4249_RS00155at 26.381 kb on + strand, within A4249_RS00155at 26.480 kb on + strand, within A4249_RS00155at 26.480 kb on + strand, within A4249_RS00155at 26.480 kb on + strand, within A4249_RS00155at 26.537 kb on + strand, within A4249_RS00155at 26.537 kb on + strand, within A4249_RS00155at 26.678 kb on + strand, within A4249_RS00155at 26.678 kb on + strand, within A4249_RS00155at 26.678 kb on + strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.679 kb on - strand, within A4249_RS00155at 26.680 kb on + strand, within A4249_RS00155at 26.680 kb on + strand, within A4249_RS00155at 26.838 kb on + strandat 26.839 kb on - strandat 26.889 kb on + strandat 26.889 kb on + strandat 26.889 kb on + strandat 26.890 kb on - strandat 26.890 kb on - strandat 26.890 kb on - strandat 27.018 kb on + strand, within A4249_RS00160at 27.018 kb on + strand, within A4249_RS00160at 27.018 kb on + strand, within A4249_RS00160at 27.018 kb on + strand, within A4249_RS00160at 27.018 kb on + strand, within A4249_RS00160at 27.018 kb on + strand, within A4249_RS00160at 27.018 kb on + strand, within A4249_RS00160at 27.019 kb on - strand, within A4249_RS00160at 27.019 kb on - strand, within A4249_RS00160at 27.019 kb on - strand, within A4249_RS00160at 27.019 kb on - strand, within A4249_RS00160at 27.019 kb on - strand, within A4249_RS00160at 27.019 kb on - strand, within A4249_RS00160at 27.222 kb on + strand, within A4249_RS00160at 27.222 kb on + strand, within A4249_RS00160at 27.223 kb on - strand, within A4249_RS00160at 27.258 kb on + strand, within A4249_RS00160at 27.258 kb on + strand, within A4249_RS00160at 27.259 kb on - strand, within A4249_RS00160at 27.259 kb on - strand, within A4249_RS00160at 27.259 kb on - strand, within A4249_RS00160at 27.259 kb on - strand, within A4249_RS00160at 27.535 kb on + strand, within A4249_RS00160at 27.536 kb on - strand, within A4249_RS00160at 27.536 kb on - strand, within A4249_RS00160at 27.536 kb on - strand, within A4249_RS00160at 27.536 kb on - strand, within A4249_RS00160at 27.536 kb on - strand, within A4249_RS00160at 27.537 kb on + strand, within A4249_RS00160at 27.537 kb on + strand, within A4249_RS00160at 27.537 kb on + strand, within A4249_RS00160at 27.537 kb on + strand, within A4249_RS00160at 27.537 kb on + strand, within A4249_RS00160at 27.537 kb on + strand, within A4249_RS00160at 27.538 kb on - strand, within A4249_RS00160at 27.538 kb on - strand, within A4249_RS00160at 27.538 kb on - strand, within A4249_RS00160at 27.538 kb on - strand, within A4249_RS00160at 27.538 kb on - strand, within A4249_RS00160at 27.538 kb on - strand, within A4249_RS00160at 27.579 kb on + strand, within A4249_RS00160at 27.579 kb on + strand, within A4249_RS00160at 27.579 kb on + strand, within A4249_RS00160at 27.579 kb on + strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.580 kb on - strand, within A4249_RS00160at 27.672 kb on + strand, within A4249_RS00160at 27.672 kb on + strand, within A4249_RS00160at 27.673 kb on - strand, within A4249_RS00160at 27.673 kb on - strand, within A4249_RS00160at 27.673 kb on - strand, within A4249_RS00160at 27.816 kb on + strandat 27.817 kb on - strandat 27.857 kb on + strandat 27.857 kb on + strandat 27.857 kb on + strandat 27.857 kb on + strandat 27.857 kb on + strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 27.858 kb on - strandat 28.087 kb on + strand, within A4249_RS00165at 28.087 kb on + strand, within A4249_RS00165at 28.088 kb on - strand, within A4249_RS00165at 28.101 kb on - strand, within A4249_RS00165at 28.101 kb on - strand, within A4249_RS00165at 28.101 kb on - strand, within A4249_RS00165at 28.101 kb on - strand, within A4249_RS00165at 28.101 kb on - strand, within A4249_RS00165at 28.145 kb on + strand, within A4249_RS00165at 28.146 kb on - strand, within A4249_RS00165at 28.172 kb on + strand, within A4249_RS00165at 28.172 kb on + strand, within A4249_RS00165at 28.173 kb on - strand, within A4249_RS00165at 28.173 kb on - strand, within A4249_RS00165at 28.290 kb on + strand, within A4249_RS00165at 28.290 kb on + strand, within A4249_RS00165at 28.290 kb on + strand, within A4249_RS00165at 28.291 kb on - strand, within A4249_RS00165at 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.571 kb on + strandat 28.572 kb on - strandat 28.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hypoxanthine 0.7347 mM (C)
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25,926 + A4249_RS00150 0.79 -1.2
25,927 - A4249_RS00150 0.79 -0.2
25,927 - A4249_RS00150 0.79 -0.9
26,088 - +0.2
26,208 + +0.8
26,294 + -0.6
26,381 + A4249_RS00155 0.24 +1.7
26,381 + A4249_RS00155 0.24 +0.2
26,480 + A4249_RS00155 0.42 +0.8
26,480 + A4249_RS00155 0.42 +0.8
26,480 + A4249_RS00155 0.42 -0.2
26,537 + A4249_RS00155 0.52 -0.4
26,537 + A4249_RS00155 0.52 -0.1
26,678 + A4249_RS00155 0.78 -0.7
26,678 + A4249_RS00155 0.78 -0.7
26,678 + A4249_RS00155 0.78 +0.5
26,679 - A4249_RS00155 0.78 +0.0
26,679 - A4249_RS00155 0.78 +1.5
26,679 - A4249_RS00155 0.78 -0.5
26,679 - A4249_RS00155 0.78 -0.5
26,679 - A4249_RS00155 0.78 +0.8
26,679 - A4249_RS00155 0.78 +0.6
26,679 - A4249_RS00155 0.78 +0.6
26,679 - A4249_RS00155 0.78 -1.2
26,679 - A4249_RS00155 0.78 -2.0
26,679 - A4249_RS00155 0.78 +1.4
26,679 - A4249_RS00155 0.78 -0.3
26,679 - A4249_RS00155 0.78 +0.5
26,679 - A4249_RS00155 0.78 +1.4
26,680 + A4249_RS00155 0.78 +0.6
26,680 + A4249_RS00155 0.78 +0.5
26,838 + +0.5
26,839 - -0.9
26,889 + -0.5
26,889 + +0.3
26,889 + -1.3
26,890 - +0.3
26,890 - +0.7
26,890 - -0.4
27,018 + A4249_RS00160 0.18 +0.5
27,018 + A4249_RS00160 0.18 +0.6
27,018 + A4249_RS00160 0.18 +0.0
27,018 + A4249_RS00160 0.18 -2.3
27,018 + A4249_RS00160 0.18 +0.2
27,018 + A4249_RS00160 0.18 -0.1
27,018 + A4249_RS00160 0.18 +0.2
27,019 - A4249_RS00160 0.18 -0.4
27,019 - A4249_RS00160 0.18 +0.9
27,019 - A4249_RS00160 0.18 -0.2
27,019 - A4249_RS00160 0.18 -0.6
27,019 - A4249_RS00160 0.18 +0.6
27,019 - A4249_RS00160 0.18 -0.7
27,222 + A4249_RS00160 0.38 -1.7
27,222 + A4249_RS00160 0.38 +0.2
27,223 - A4249_RS00160 0.38 -1.2
27,258 + A4249_RS00160 0.42 +1.1
27,258 + A4249_RS00160 0.42 +1.9
27,259 - A4249_RS00160 0.42 +1.1
27,259 - A4249_RS00160 0.42 -0.4
27,259 - A4249_RS00160 0.42 +1.0
27,259 - A4249_RS00160 0.42 +1.0
27,535 + A4249_RS00160 0.69 -1.1
27,536 - A4249_RS00160 0.70 -1.8
27,536 - A4249_RS00160 0.70 -0.1
27,536 - A4249_RS00160 0.70 -0.0
27,536 - A4249_RS00160 0.70 +0.2
27,536 - A4249_RS00160 0.70 -0.3
27,537 + A4249_RS00160 0.70 +0.6
27,537 + A4249_RS00160 0.70 +2.5
27,537 + A4249_RS00160 0.70 -0.6
27,537 + A4249_RS00160 0.70 +1.2
27,537 + A4249_RS00160 0.70 -1.5
27,537 + A4249_RS00160 0.70 +0.6
27,538 - A4249_RS00160 0.70 -0.6
27,538 - A4249_RS00160 0.70 -1.4
27,538 - A4249_RS00160 0.70 -0.0
27,538 - A4249_RS00160 0.70 +0.2
27,538 - A4249_RS00160 0.70 -2.2
27,538 - A4249_RS00160 0.70 -0.7
27,579 + A4249_RS00160 0.74 -0.8
27,579 + A4249_RS00160 0.74 -0.1
27,579 + A4249_RS00160 0.74 +0.1
27,579 + A4249_RS00160 0.74 -1.4
27,580 - A4249_RS00160 0.74 -0.0
27,580 - A4249_RS00160 0.74 -0.1
27,580 - A4249_RS00160 0.74 +0.8
27,580 - A4249_RS00160 0.74 +1.2
27,580 - A4249_RS00160 0.74 -0.9
27,580 - A4249_RS00160 0.74 -1.4
27,580 - A4249_RS00160 0.74 +0.4
27,672 + A4249_RS00160 0.83 +0.7
27,672 + A4249_RS00160 0.83 +0.9
27,673 - A4249_RS00160 0.83 +0.9
27,673 - A4249_RS00160 0.83 -1.4
27,673 - A4249_RS00160 0.83 +0.2
27,816 + +0.5
27,817 - +0.2
27,857 + +0.2
27,857 + -1.0
27,857 + +1.7
27,857 + -0.0
27,857 + -0.0
27,858 - -0.8
27,858 - +0.7
27,858 - +0.8
27,858 - -1.5
27,858 - -0.4
27,858 - -1.3
27,858 - -0.3
27,858 - +0.6
27,858 - -0.7
27,858 - -0.7
28,087 + A4249_RS00165 0.31 -0.7
28,087 + A4249_RS00165 0.31 -0.2
28,088 - A4249_RS00165 0.31 +0.2
28,101 - A4249_RS00165 0.33 +1.8
28,101 - A4249_RS00165 0.33 +1.7
28,101 - A4249_RS00165 0.33 +0.2
28,101 - A4249_RS00165 0.33 +0.3
28,101 - A4249_RS00165 0.33 -0.2
28,145 + A4249_RS00165 0.39 +0.5
28,146 - A4249_RS00165 0.39 +0.6
28,172 + A4249_RS00165 0.42 +1.3
28,172 + A4249_RS00165 0.42 +1.6
28,173 - A4249_RS00165 0.42 -0.8
28,173 - A4249_RS00165 0.42 +0.7
28,290 + A4249_RS00165 0.57 +0.4
28,290 + A4249_RS00165 0.57 -0.2
28,290 + A4249_RS00165 0.57 +0.1
28,291 - A4249_RS00165 0.57 +0.7
28,571 + +0.7
28,571 + -0.2
28,571 + +0.2
28,571 + -0.1
28,571 + +0.4
28,571 + +0.8
28,571 + +0.4
28,571 + -0.3
28,571 + -0.3
28,571 + -0.4
28,572 - +1.0
28,572 - +0.4

Or see this region's nucleotide sequence