Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt espP and NIAGMN_28655 are separated by 180 nucleotides NIAGMN_28655 and NIAGMN_28660 are separated by 157 nucleotides NIAGMN_28660 and katP are separated by 43 nucleotides
NIAGMN_28650: espP - serine protease autotransporter EspP, at 34,509 to 38,411
espP
NIAGMN_28655: NIAGMN_28655 - IS3 family transposase, at 38,592 to 39,479
_28655
NIAGMN_28660: NIAGMN_28660 - cytochrome b562 family protein, at 39,637 to 40,026
_28660
NIAGMN_28665: katP - catalase/peroxidase KatP, at 40,070 to 42,280
katP
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.603 kb on + strand, within espP at 37.647 kb on - strand, within espP at 37.649 kb on + strand, within espP at 37.739 kb on - strand, within espP at 37.751 kb on + strand, within espP at 37.762 kb on - strand, within espP at 37.835 kb on - strand, within espP at 37.958 kb on + strand, within espP at 37.958 kb on + strand, within espP at 38.027 kb on + strand at 38.028 kb on - strand at 38.028 kb on - strand at 38.050 kb on + strand at 38.050 kb on + strand at 38.050 kb on + strand at 38.050 kb on + strand at 38.051 kb on - strand at 38.051 kb on - strand at 38.051 kb on - strand at 38.051 kb on - strand at 38.063 kb on + strand at 38.063 kb on + strand at 38.063 kb on + strand at 38.063 kb on + strand at 38.064 kb on - strand at 38.159 kb on + strand at 38.208 kb on - strand at 38.209 kb on + strand at 38.210 kb on - strand at 38.268 kb on + strand at 38.378 kb on + strand at 38.387 kb on - strand at 38.391 kb on - strand at 38.413 kb on + strand at 38.452 kb on + strand at 38.453 kb on - strand at 38.487 kb on + strand at 38.487 kb on + strand at 38.488 kb on - strand at 38.502 kb on + strand at 38.502 kb on + strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.534 kb on + strand at 39.584 kb on + strand at 39.590 kb on + strand at 39.591 kb on - strand at 39.591 kb on - strand at 39.603 kb on + strand at 39.604 kb on - strand at 39.604 kb on - strand at 39.604 kb on - strand at 39.604 kb on - strand at 39.608 kb on - strand at 39.649 kb on - strand at 39.700 kb on - strand, within NIAGMN_28660 at 39.700 kb on - strand, within NIAGMN_28660 at 39.742 kb on - strand, within NIAGMN_28660 at 39.742 kb on - strand, within NIAGMN_28660 at 39.772 kb on + strand, within NIAGMN_28660 at 39.773 kb on - strand, within NIAGMN_28660 at 39.773 kb on - strand, within NIAGMN_28660 at 39.773 kb on - strand, within NIAGMN_28660 at 39.775 kb on - strand, within NIAGMN_28660 at 39.777 kb on - strand, within NIAGMN_28660 at 39.842 kb on - strand, within NIAGMN_28660 at 39.842 kb on - strand, within NIAGMN_28660 at 39.842 kb on - strand, within NIAGMN_28660 at 39.885 kb on + strand, within NIAGMN_28660 at 39.912 kb on + strand, within NIAGMN_28660 at 39.960 kb on + strand, within NIAGMN_28660 at 39.960 kb on + strand, within NIAGMN_28660 at 39.961 kb on - strand, within NIAGMN_28660 at 39.982 kb on + strand, within NIAGMN_28660 at 39.983 kb on - strand, within NIAGMN_28660 at 39.983 kb on - strand, within NIAGMN_28660 at 39.991 kb on - strand at 39.991 kb on - strand at 40.005 kb on + strand at 40.005 kb on + strand at 40.011 kb on + strand at 40.112 kb on - strand at 40.169 kb on + strand at 40.188 kb on - strand at 40.269 kb on + strand at 40.270 kb on - strand at 40.270 kb on - strand at 40.273 kb on + strand at 40.274 kb on - strand at 40.292 kb on - strand, within katP at 40.387 kb on + strand, within katP at 40.462 kb on + strand, within katP
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 37,603 + espP NIAGMN_28650 0.79 -1.5 37,647 - espP NIAGMN_28650 0.80 -0.9 37,649 + espP NIAGMN_28650 0.80 +1.0 37,739 - espP NIAGMN_28650 0.83 -0.2 37,751 + espP NIAGMN_28650 0.83 -0.8 37,762 - espP NIAGMN_28650 0.83 -1.8 37,835 - espP NIAGMN_28650 0.85 +0.6 37,958 + espP NIAGMN_28650 0.88 -1.6 37,958 + espP NIAGMN_28650 0.88 -1.3 38,027 + +1.3 38,028 - +0.4 38,028 - -0.4 38,050 + -1.9 38,050 + +0.3 38,050 + +0.5 38,050 + +0.5 38,051 - +0.5 38,051 - +2.0 38,051 - -1.3 38,051 - -0.6 38,063 + +0.1 38,063 + -0.3 38,063 + +0.2 38,063 + -2.3 38,064 - +0.4 38,159 + -0.5 38,208 - -0.8 38,209 + -1.8 38,210 - -2.3 38,268 + -1.4 38,378 + -0.4 38,387 - +0.3 38,391 - -2.8 38,413 + +2.3 38,452 + -1.5 38,453 - +2.9 38,487 + +0.9 38,487 + +0.9 38,488 - -1.9 38,502 + +0.9 38,502 + +2.9 38,519 - +2.1 38,519 - -2.0 38,534 + -1.7 39,584 + -0.4 39,590 + -0.5 39,591 - -0.6 39,591 - +0.0 39,603 + +1.0 39,604 - +1.8 39,604 - -0.7 39,604 - -0.6 39,604 - +0.0 39,608 - -2.9 39,649 - -1.1 39,700 - NIAGMN_28660 0.16 +1.4 39,700 - NIAGMN_28660 0.16 -0.5 39,742 - NIAGMN_28660 0.27 -3.4 39,742 - NIAGMN_28660 0.27 +1.4 39,772 + NIAGMN_28660 0.35 -1.0 39,773 - NIAGMN_28660 0.35 -0.7 39,773 - NIAGMN_28660 0.35 -0.7 39,773 - NIAGMN_28660 0.35 +0.5 39,775 - NIAGMN_28660 0.35 +1.0 39,777 - NIAGMN_28660 0.36 -0.2 39,842 - NIAGMN_28660 0.53 +0.5 39,842 - NIAGMN_28660 0.53 -2.4 39,842 - NIAGMN_28660 0.53 -0.2 39,885 + NIAGMN_28660 0.64 +2.2 39,912 + NIAGMN_28660 0.71 +1.1 39,960 + NIAGMN_28660 0.83 -0.3 39,960 + NIAGMN_28660 0.83 +1.4 39,961 - NIAGMN_28660 0.83 +2.5 39,982 + NIAGMN_28660 0.88 +2.7 39,983 - NIAGMN_28660 0.89 +0.0 39,983 - NIAGMN_28660 0.89 -0.1 39,991 - -0.8 39,991 - -1.1 40,005 + +2.2 40,005 + +0.5 40,011 + +0.1 40,112 - +0.6 40,169 + -0.2 40,188 - +1.1 40,269 + +0.3 40,270 - -1.7 40,270 - +0.4 40,273 + -2.0 40,274 - +2.2 40,292 - katP NIAGMN_28665 0.10 +0.3 40,387 + katP NIAGMN_28665 0.14 +1.9 40,462 + katP NIAGMN_28665 0.18 +0.4
Or see this region's nucleotide sequence