Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25965

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_25955 and NIAGMN_25960 overlap by 26 nucleotidesNIAGMN_25960 and uspF are separated by 140 nucleotidesuspF and nleG5-1 are separated by 580 nucleotides NIAGMN_25955: NIAGMN_25955 - Putative outer membrane protein, at 5,071,505 to 5,071,876 _25955 NIAGMN_25960: NIAGMN_25960 - hypothetical protein, at 5,071,851 to 5,072,618 _25960 NIAGMN_25965: uspF - universal stress protein UspF, at 5,072,759 to 5,073,193 uspF NIAGMN_25970: nleG5-1 - DUF1076 domain-containing protein, at 5,073,774 to 5,074,415 nleG5-1 Position (kb) 5072 5073 5074Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5071.896 kb on - strandat 5072.232 kb on - strand, within NIAGMN_25960at 5072.256 kb on + strand, within NIAGMN_25960at 5072.596 kb on + strandat 5072.657 kb on - strandat 5072.897 kb on + strand, within uspFat 5073.346 kb on - strandat 5073.588 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
5,071,896 - +0.5
5,072,232 - NIAGMN_25960 0.50 +0.5
5,072,256 + NIAGMN_25960 0.53 +2.6
5,072,596 + -3.7
5,072,657 - +2.4
5,072,897 + uspF NIAGMN_25965 0.32 +0.6
5,073,346 - +2.5
5,073,588 + +0.7

Or see this region's nucleotide sequence