Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25755

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcL and tehB are separated by 303 nucleotidestehB and tehA overlap by 4 nucleotides NIAGMN_25750: ydcL - Uncharacterized lipoprotein YdcL, at 5,025,265 to 5,025,933 ydcL NIAGMN_25755: tehB - tellurite resistance methyltransferase TehB, at 5,026,237 to 5,026,830 tehB NIAGMN_25760: tehA - dicarboxylate transporter/tellurite-resistance protein TehA, at 5,026,827 to 5,027,819 tehA Position (kb) 5026 5027Strain fitness (log2 ratio) -2 -1 0 1 2at 5025.544 kb on - strand, within ydcLat 5025.710 kb on + strand, within ydcLat 5025.740 kb on + strand, within ydcLat 5025.898 kb on + strandat 5026.130 kb on + strandat 5026.363 kb on + strand, within tehBat 5026.364 kb on - strand, within tehBat 5027.028 kb on + strand, within tehAat 5027.060 kb on + strand, within tehAat 5027.078 kb on - strand, within tehA

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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5,025,544 - ydcL NIAGMN_25750 0.42 -2.2
5,025,710 + ydcL NIAGMN_25750 0.67 +2.2
5,025,740 + ydcL NIAGMN_25750 0.71 +0.4
5,025,898 + +0.5
5,026,130 + -2.6
5,026,363 + tehB NIAGMN_25755 0.21 +1.3
5,026,364 - tehB NIAGMN_25755 0.21 -0.8
5,027,028 + tehA NIAGMN_25760 0.20 +0.4
5,027,060 + tehA NIAGMN_25760 0.23 -0.3
5,027,078 - tehA NIAGMN_25760 0.25 -1.8

Or see this region's nucleotide sequence