Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25430

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdigH and dosC are separated by 376 nucleotidesdosC and dosP are separated by 24 nucleotides NIAGMN_25425: digH - Glycosyl hydrolase DigH, at 4,955,833 to 4,957,152 digH NIAGMN_25430: dosC - diguanylate cyclase DosC, at 4,957,529 to 4,958,911 dosC NIAGMN_25435: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 4,958,936 to 4,960,177 dosP Position (kb) 4957 4958 4959Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4956.853 kb on + strand, within digHat 4956.958 kb on + strand, within digHat 4957.516 kb on - strandat 4957.994 kb on - strand, within dosCat 4958.116 kb on + strand, within dosCat 4958.211 kb on - strand, within dosCat 4958.290 kb on + strand, within dosCat 4958.350 kb on + strand, within dosCat 4958.351 kb on - strand, within dosCat 4958.521 kb on + strand, within dosCat 4958.566 kb on + strand, within dosCat 4958.856 kb on - strandat 4959.109 kb on + strand, within dosPat 4959.110 kb on - strand, within dosP

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,956,853 + digH NIAGMN_25425 0.77 -1.2
4,956,958 + digH NIAGMN_25425 0.85 -0.1
4,957,516 - +1.0
4,957,994 - dosC NIAGMN_25430 0.34 -2.9
4,958,116 + dosC NIAGMN_25430 0.42 +0.3
4,958,211 - dosC NIAGMN_25430 0.49 +1.5
4,958,290 + dosC NIAGMN_25430 0.55 +0.6
4,958,350 + dosC NIAGMN_25430 0.59 -3.9
4,958,351 - dosC NIAGMN_25430 0.59 -1.5
4,958,521 + dosC NIAGMN_25430 0.72 -1.3
4,958,566 + dosC NIAGMN_25430 0.75 +1.1
4,958,856 - -0.4
4,959,109 + dosP NIAGMN_25435 0.14 -0.3
4,959,110 - dosP NIAGMN_25435 0.14 -1.1

Or see this region's nucleotide sequence