Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25370

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeS and ydeR are separated by 12 nucleotidesydeR and ydeQ are separated by 59 nucleotidesydeQ and ydeP are separated by 333 nucleotides NIAGMN_25360: ydeS - Uncharacterized fimbrial-like protein YdeS, at 4,935,816 to 4,936,346 ydeS NIAGMN_25365: ydeR - Uncharacterized fimbrial-like protein YdeR, at 4,936,359 to 4,936,862 ydeR NIAGMN_25370: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 4,936,922 to 4,937,836 ydeQ NIAGMN_25375: ydeP - acid resistance putative oxidoreductase YdeP, at 4,938,170 to 4,940,449 ydeP Position (kb) 4936 4937 4938Strain fitness (log2 ratio) -2 -1 0 1 2at 4937.202 kb on - strand, within ydeQat 4937.547 kb on + strand, within ydeQat 4937.825 kb on - strandat 4938.109 kb on - strandat 4938.113 kb on - strandat 4938.167 kb on + strandat 4938.341 kb on - strandat 4938.414 kb on + strand, within ydePat 4938.513 kb on - strand, within ydePat 4938.688 kb on + strand, within ydePat 4938.689 kb on - strand, within ydePat 4938.756 kb on + strand, within ydePat 4938.820 kb on + strand, within ydeP

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,937,202 - ydeQ NIAGMN_25370 0.31 +1.0
4,937,547 + ydeQ NIAGMN_25370 0.68 -0.0
4,937,825 - +0.8
4,938,109 - -2.5
4,938,113 - -1.9
4,938,167 + -1.9
4,938,341 - +2.6
4,938,414 + ydeP NIAGMN_25375 0.11 -0.2
4,938,513 - ydeP NIAGMN_25375 0.15 -2.1
4,938,688 + ydeP NIAGMN_25375 0.23 +0.5
4,938,689 - ydeP NIAGMN_25375 0.23 +1.5
4,938,756 + ydeP NIAGMN_25375 0.26 +0.8
4,938,820 + ydeP NIAGMN_25375 0.29 -1.8

Or see this region's nucleotide sequence