Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_25055 and yjdB are separated by 7 nucleotides yjdB and NIAGMN_25065 are separated by 13 nucleotides NIAGMN_25065 and NIAGMN_25070 are separated by 26 nucleotides NIAGMN_25070 and NIAGMN_25075 overlap by 20 nucleotides
NIAGMN_25055: NIAGMN_25055 - phage tail protein, at 4,872,147 to 4,872,542
_25055
NIAGMN_25060: yjdB - phage tail protein, at 4,872,550 to 4,873,302
yjdB
NIAGMN_25065: NIAGMN_25065 - phage minor tail protein G, at 4,873,316 to 4,873,738
_25065
NIAGMN_25070: NIAGMN_25070 - phage tail assembly protein T, at 4,873,765 to 4,874,178
_25070
NIAGMN_25075: NIAGMN_25075 - phage tail tape measure protein, at 4,874,159 to 4,876,771
_25075
Position (kb) 4873
4874 Strain fitness (log2 ratio) -2
-1
0
1 at 4872.335 kb on + strand, within NIAGMN_25055 at 4872.335 kb on + strand, within NIAGMN_25055 at 4872.335 kb on + strand, within NIAGMN_25055 at 4872.349 kb on + strand, within NIAGMN_25055 at 4872.488 kb on + strand, within NIAGMN_25055 at 4873.849 kb on + strand, within NIAGMN_25070 at 4874.070 kb on + strand, within NIAGMN_25070 at 4874.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,872,335 + NIAGMN_25055 0.47 +0.4 4,872,335 + NIAGMN_25055 0.47 +1.2 4,872,335 + NIAGMN_25055 0.47 -2.4 4,872,349 + NIAGMN_25055 0.51 -1.3 4,872,488 + NIAGMN_25055 0.86 +1.1 4,873,849 + NIAGMN_25070 0.20 +1.1 4,874,070 + NIAGMN_25070 0.74 -0.3 4,874,284 + -1.7
Or see this region's nucleotide sequence