Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24560

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_24540 and NIAGMN_24545 are separated by 147 nucleotidesNIAGMN_24545 and NIAGMN_24550 are separated by 37 nucleotidesNIAGMN_24550 and NIAGMN_24555 are separated by 75 nucleotidesNIAGMN_24555 and NIAGMN_24560 are separated by 4 nucleotidesNIAGMN_24560 and NIAGMN_24565 are separated by 50 nucleotidesNIAGMN_24565 and NIAGMN_24570 are separated by 270 nucleotides NIAGMN_24540: NIAGMN_24540 - sialate O-acetylesterase, at 4,788,855 to 4,790,792 _24540 NIAGMN_24545: NIAGMN_24545 - DUF1378 domain-containing protein, at 4,790,940 to 4,791,122 _24545 NIAGMN_24550: NIAGMN_24550 - DUF826 domain-containing protein, at 4,791,160 to 4,791,429 _24550 NIAGMN_24555: NIAGMN_24555 - lysis protein, at 4,791,505 to 4,791,720 _24555 NIAGMN_24560: NIAGMN_24560 - DUF1327 domain-containing protein, at 4,791,725 to 4,792,069 _24560 NIAGMN_24565: NIAGMN_24565 - SAR-endolysin, at 4,792,120 to 4,792,653 _24565 NIAGMN_24570: NIAGMN_24570 - Phage antirepressor protein, at 4,792,924 to 4,793,493 _24570 Position (kb) 4791 4792 4793Strain fitness (log2 ratio) -1 0 1 2at 4790.790 kb on + strandat 4790.920 kb on - strandat 4790.951 kb on - strandat 4790.967 kb on + strand, within NIAGMN_24545at 4790.994 kb on + strand, within NIAGMN_24545at 4791.030 kb on + strand, within NIAGMN_24545at 4791.427 kb on + strandat 4791.427 kb on + strandat 4791.427 kb on + strandat 4791.433 kb on + strandat 4791.433 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
4,790,790 + -0.9
4,790,920 - +1.8
4,790,951 - -0.9
4,790,967 + NIAGMN_24545 0.15 +1.0
4,790,994 + NIAGMN_24545 0.30 -0.7
4,791,030 + NIAGMN_24545 0.49 +0.0
4,791,427 + +1.0
4,791,427 + +0.8
4,791,427 + +2.3
4,791,433 + -1.2
4,791,433 + +1.6

Or see this region's nucleotide sequence