Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23925

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlolE and NIAGMN_23925 are separated by 8 nucleotidesNIAGMN_23925 and NIAGMN_23930 overlap by 4 nucleotides NIAGMN_23920: lolE - ABC transporter permease, at 4,684,824 to 4,686,134 lolE NIAGMN_23925: NIAGMN_23925 - Outer membrane lipoprotein-sorting protein, at 4,686,143 to 4,686,931 _23925 NIAGMN_23930: NIAGMN_23930 - hypothetical protein, at 4,686,928 to 4,688,316 _23930 Position (kb) 4686 4687Strain fitness (log2 ratio) -3 -2 -1 0 1at 4685.994 kb on - strand, within lolEat 4686.579 kb on - strand, within NIAGMN_23925at 4686.748 kb on - strand, within NIAGMN_23925at 4686.910 kb on + strandat 4686.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,685,994 - lolE NIAGMN_23920 0.89 -2.7
4,686,579 - NIAGMN_23925 0.55 -0.4
4,686,748 - NIAGMN_23925 0.77 -0.2
4,686,910 + -3.2
4,686,911 - -0.2

Or see this region's nucleotide sequence