Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23120

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23115 and cspG are separated by 939 nucleotidescspG and yccM are separated by 614 nucleotides NIAGMN_23115: NIAGMN_23115 - Threonine-rich inner membrane protein GfcA, at 4,549,875 to 4,550,180 _23115 NIAGMN_23120: cspG - cold shock protein CspG, at 4,551,120 to 4,551,332 cspG NIAGMN_23125: yccM - Putative electron transport protein YccM, at 4,551,947 to 4,553,020 yccM Position (kb) 4551 4552Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4550.211 kb on - strandat 4550.211 kb on - strandat 4550.215 kb on - strandat 4550.246 kb on - strandat 4550.290 kb on - strandat 4550.290 kb on - strandat 4550.290 kb on - strandat 4550.292 kb on - strandat 4550.292 kb on - strandat 4550.292 kb on - strandat 4550.293 kb on + strandat 4550.294 kb on - strandat 4550.357 kb on - strandat 4550.486 kb on + strandat 4550.486 kb on + strandat 4550.632 kb on + strandat 4550.632 kb on + strandat 4550.698 kb on - strandat 4550.700 kb on - strandat 4550.987 kb on + strandat 4550.987 kb on + strandat 4550.994 kb on + strandat 4550.999 kb on + strandat 4551.017 kb on + strandat 4551.060 kb on + strandat 4551.060 kb on + strandat 4551.064 kb on + strandat 4551.064 kb on + strandat 4551.064 kb on + strandat 4551.119 kb on + strandat 4551.319 kb on + strandat 4551.320 kb on - strandat 4551.445 kb on - strandat 4551.453 kb on + strandat 4551.494 kb on + strandat 4551.494 kb on + strandat 4551.529 kb on + strandat 4551.560 kb on - strandat 4551.562 kb on - strandat 4551.588 kb on + strandat 4551.589 kb on - strandat 4551.593 kb on - strandat 4551.595 kb on - strandat 4551.684 kb on + strandat 4551.721 kb on + strandat 4551.872 kb on + strandat 4551.872 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,550,211 - +0.6
4,550,211 - -0.3
4,550,215 - -4.0
4,550,246 - +0.1
4,550,290 - +0.1
4,550,290 - +1.5
4,550,290 - -0.7
4,550,292 - +1.2
4,550,292 - -2.9
4,550,292 - -0.3
4,550,293 + +0.2
4,550,294 - -0.1
4,550,357 - -1.7
4,550,486 + +3.0
4,550,486 + -1.0
4,550,632 + -1.9
4,550,632 + +2.9
4,550,698 - -1.6
4,550,700 - +0.8
4,550,987 + +0.2
4,550,987 + +0.5
4,550,994 + -0.3
4,550,999 + -0.7
4,551,017 + -1.1
4,551,060 + -0.2
4,551,060 + -0.5
4,551,064 + +2.1
4,551,064 + -0.1
4,551,064 + +0.2
4,551,119 + -2.3
4,551,319 + -0.6
4,551,320 - -0.5
4,551,445 - -1.7
4,551,453 + -0.7
4,551,494 + -2.5
4,551,494 + -1.5
4,551,529 + +0.7
4,551,560 - -2.1
4,551,562 - +2.1
4,551,588 + -0.9
4,551,589 - +0.6
4,551,593 - +0.7
4,551,595 - -0.2
4,551,684 + +2.5
4,551,721 + -2.9
4,551,872 + -1.8
4,551,872 + -0.4

Or see this region's nucleotide sequence