Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22680

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22670 and Asn_trna are separated by 448 nucleotidesAsn_trna and ycdB are separated by 449 nucleotidesycdB and amn are separated by 342 nucleotides NIAGMN_22670: NIAGMN_22670 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 4,471,244 to 4,472,350 _22670 NIAGMN_22675: Asn_trna - tRNA-Asn(gtt), at 4,472,799 to 4,472,874 _trna NIAGMN_22680: ycdB - putative transcriptional regulatory protein YcdB, at 4,473,324 to 4,474,040 ycdB NIAGMN_22685: amn - AMP nucleosidase, at 4,474,383 to 4,475,837 amn Position (kb) 4473 4474 4475Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4472.348 kb on + strandat 4472.404 kb on + strandat 4472.473 kb on + strandat 4472.522 kb on + strandat 4472.522 kb on + strandat 4473.655 kb on + strand, within ycdBat 4474.651 kb on - strand, within amnat 4474.655 kb on + strand, within amnat 4474.881 kb on + strand, within amnat 4474.881 kb on + strand, within amnat 4474.885 kb on + strand, within amnat 4475.018 kb on + strand, within amn

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,472,348 + -0.0
4,472,404 + +1.3
4,472,473 + -1.4
4,472,522 + +5.0
4,472,522 + -0.2
4,473,655 + ycdB NIAGMN_22680 0.46 -0.7
4,474,651 - amn NIAGMN_22685 0.18 +0.6
4,474,655 + amn NIAGMN_22685 0.19 +2.5
4,474,881 + amn NIAGMN_22685 0.34 +2.5
4,474,881 + amn NIAGMN_22685 0.34 +2.7
4,474,885 + amn NIAGMN_22685 0.35 -1.1
4,475,018 + amn NIAGMN_22685 0.44 -0.1

Or see this region's nucleotide sequence