Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22530

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeA and yeeX are separated by 171 nucleotidesyeeX and yeeW are separated by 897 nucleotides NIAGMN_22525: yeeA - Inner membrane protein YeeA, at 4,447,275 to 4,448,333 yeeA NIAGMN_22530: yeeX - DUF496 domain-containing protein, at 4,448,505 to 4,448,834 yeeX NIAGMN_22535: yeeW - Protein YeeW, at 4,449,732 to 4,449,926 yeeW Position (kb) 4448 4449Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4447.950 kb on - strand, within yeeAat 4447.965 kb on + strand, within yeeAat 4447.965 kb on + strand, within yeeAat 4447.966 kb on - strand, within yeeAat 4447.966 kb on - strand, within yeeAat 4448.107 kb on + strand, within yeeAat 4448.133 kb on + strand, within yeeAat 4448.250 kb on + strandat 4448.256 kb on + strandat 4448.256 kb on + strandat 4448.257 kb on - strandat 4448.257 kb on - strandat 4448.564 kb on + strand, within yeeXat 4448.655 kb on + strand, within yeeXat 4448.718 kb on + strand, within yeeXat 4448.739 kb on + strand, within yeeXat 4448.739 kb on + strand, within yeeXat 4448.897 kb on + strandat 4448.928 kb on - strandat 4449.312 kb on - strandat 4449.350 kb on + strandat 4449.711 kb on - strandat 4449.831 kb on - strand, within yeeW

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,447,950 - yeeA NIAGMN_22525 0.64 -0.7
4,447,965 + yeeA NIAGMN_22525 0.65 +1.1
4,447,965 + yeeA NIAGMN_22525 0.65 -2.7
4,447,966 - yeeA NIAGMN_22525 0.65 -1.3
4,447,966 - yeeA NIAGMN_22525 0.65 -1.3
4,448,107 + yeeA NIAGMN_22525 0.79 -1.8
4,448,133 + yeeA NIAGMN_22525 0.81 +0.9
4,448,250 + -0.9
4,448,256 + -2.2
4,448,256 + +1.1
4,448,257 - -1.4
4,448,257 - +3.6
4,448,564 + yeeX NIAGMN_22530 0.18 +0.7
4,448,655 + yeeX NIAGMN_22530 0.45 -0.7
4,448,718 + yeeX NIAGMN_22530 0.65 -1.2
4,448,739 + yeeX NIAGMN_22530 0.71 +0.7
4,448,739 + yeeX NIAGMN_22530 0.71 -1.0
4,448,897 + +0.5
4,448,928 - +3.0
4,449,312 - -1.6
4,449,350 + -2.4
4,449,711 - +0.1
4,449,831 - yeeW NIAGMN_22535 0.51 -0.4

Or see this region's nucleotide sequence