Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18740

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18735 and NIAGMN_18740 are separated by 203 nucleotidesNIAGMN_18740 and NIAGMN_18745 are separated by 0 nucleotidesNIAGMN_18745 and NIAGMN_18750 are separated by 97 nucleotides NIAGMN_18735: NIAGMN_18735 - integrase, at 3,704,463 to 3,705,569 _18735 NIAGMN_18740: NIAGMN_18740 - DNA-binding protein, at 3,705,773 to 3,707,404 _18740 NIAGMN_18745: NIAGMN_18745 - hypothetical protein, at 3,707,405 to 3,707,803 _18745 NIAGMN_18750: NIAGMN_18750 - hypothetical protein, at 3,707,901 to 3,708,314 _18750 Position (kb) 3705 3706 3707 3708Strain fitness (log2 ratio) -3 -2 -1 0 1at 3705.254 kb on + strand, within NIAGMN_18735at 3706.001 kb on - strand, within NIAGMN_18740at 3706.417 kb on + strand, within NIAGMN_18740at 3708.114 kb on + strand, within NIAGMN_18750

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,705,254 + NIAGMN_18735 0.71 -0.2
3,706,001 - NIAGMN_18740 0.14 -3.2
3,706,417 + NIAGMN_18740 0.39 +1.1
3,708,114 + NIAGMN_18750 0.51 -0.8

Or see this region's nucleotide sequence