Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18705

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygaQ and Ile2_trna are separated by 560 nucleotidesIle2_trna and NIAGMN_18710 are separated by 751 nucleotides NIAGMN_18700: ygaQ - Putative uncharacterized protein YgaQ, at 3,691,852 to 3,693,090 ygaQ NIAGMN_18705: Ile2_trna - tRNA-Ile2(cat), at 3,693,651 to 3,693,726 _trna NIAGMN_18710: NIAGMN_18710 - DUF5508 domain-containing protein, at 3,694,478 to 3,695,827 _18710 Position (kb) 3693 3694Strain fitness (log2 ratio) -2 -1 0 1at 3693.414 kb on + strandat 3693.459 kb on + strandat 3693.469 kb on + strandat 3693.546 kb on + strandat 3693.547 kb on - strandat 3693.598 kb on + strandat 3693.614 kb on - strandat 3693.627 kb on + strandat 3693.631 kb on + strandat 3693.631 kb on + strandat 3693.631 kb on + strandat 3693.631 kb on + strandat 3693.644 kb on + strandat 3693.648 kb on + strandat 3693.649 kb on - strandat 3693.878 kb on + strandat 3693.964 kb on + strandat 3693.965 kb on - strandat 3694.089 kb on - strandat 3694.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,693,414 + +0.3
3,693,459 + -1.7
3,693,469 + +0.7
3,693,546 + +0.6
3,693,547 - +1.1
3,693,598 + +1.2
3,693,614 - +0.4
3,693,627 + -0.0
3,693,631 + -2.7
3,693,631 + +1.3
3,693,631 + -0.1
3,693,631 + -0.5
3,693,644 + +1.2
3,693,648 + +0.2
3,693,649 - +0.3
3,693,878 + -2.4
3,693,964 + +1.2
3,693,965 - -2.1
3,694,089 - -0.3
3,694,149 - -2.4

Or see this region's nucleotide sequence