Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18550

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,664,057	-	emrB	NIAGMN_18545	0.45	+1.1
3,664,057	-	emrB	NIAGMN_18545	0.45	+0.7
3,664,057	-	emrB	NIAGMN_18545	0.45	-2.7
3,664,058	+	emrB	NIAGMN_18545	0.45	+2.3
3,664,059	-	emrB	NIAGMN_18545	0.45	+0.5
3,664,059	-	emrB	NIAGMN_18545	0.45	+0.4
3,664,059	-	emrB	NIAGMN_18545	0.45	-0.9
3,664,105	-	emrB	NIAGMN_18545	0.48	-1.7
3,664,105	-	emrB	NIAGMN_18545	0.48	-1.9
3,664,198	-	emrB	NIAGMN_18545	0.54	-0.2
3,664,246	-	emrB	NIAGMN_18545	0.58	-2.6
3,664,391	-	emrB	NIAGMN_18545	0.67	+0.0
3,664,406	+	emrB	NIAGMN_18545	0.68	+1.6
3,664,406	+	emrB	NIAGMN_18545	0.68	-1.4
3,664,410	+	emrB	NIAGMN_18545	0.68	+2.3
3,664,420	-	emrB	NIAGMN_18545	0.69	+0.1
3,664,422	-	emrB	NIAGMN_18545	0.69	+0.2
3,664,522	+	emrB	NIAGMN_18545	0.75	-2.3
3,664,523	-	emrB	NIAGMN_18545	0.76	-1.7
3,664,591	-	emrB	NIAGMN_18545	0.80	-2.4
3,664,629	+	emrB	NIAGMN_18545	0.82	-1.9
3,664,630	-	emrB	NIAGMN_18545	0.82	+2.0
3,664,630	-	emrB	NIAGMN_18545	0.82	+2.4
3,664,801	-				-0.2
3,664,858	-				+1.5
3,664,935	-				-1.5
3,665,012	+				-0.3
3,665,013	-				+0.4
3,665,017	+				-1.1
3,665,018	-				-0.6
3,665,027	+				+2.2
3,665,198	-	emrA	NIAGMN_18550	0.24	+0.5
3,665,236	-	emrA	NIAGMN_18550	0.27	-1.6
3,665,236	-	emrA	NIAGMN_18550	0.27	-1.2
3,665,236	-	emrA	NIAGMN_18550	0.27	-2.4
3,665,236	-	emrA	NIAGMN_18550	0.27	-1.3
3,665,236	-	emrA	NIAGMN_18550	0.27	-2.6
3,665,254	-	emrA	NIAGMN_18550	0.29	+1.3
3,665,257	+	emrA	NIAGMN_18550	0.29	-2.1
3,665,258	-	emrA	NIAGMN_18550	0.29	-0.8
3,665,258	-	emrA	NIAGMN_18550	0.29	-0.6
3,665,258	-	emrA	NIAGMN_18550	0.29	-0.5
3,665,258	-	emrA	NIAGMN_18550	0.29	+0.9
3,665,335	+	emrA	NIAGMN_18550	0.36	+2.2
3,665,335	+	emrA	NIAGMN_18550	0.36	-2.4
3,665,335	+	emrA	NIAGMN_18550	0.36	-0.7
3,665,336	-	emrA	NIAGMN_18550	0.36	-0.1
3,665,336	-	emrA	NIAGMN_18550	0.36	-2.6
3,665,336	-	emrA	NIAGMN_18550	0.36	+0.2
3,665,336	-	emrA	NIAGMN_18550	0.36	-1.4
3,665,336	-	emrA	NIAGMN_18550	0.36	+2.9
3,665,336	-	emrA	NIAGMN_18550	0.36	-1.3
3,665,336	-	emrA	NIAGMN_18550	0.36	+1.5
3,665,396	+	emrA	NIAGMN_18550	0.41	-0.3
3,665,416	-	emrA	NIAGMN_18550	0.43	-2.5
3,665,437	+	emrA	NIAGMN_18550	0.44	-1.1
3,665,471	+	emrA	NIAGMN_18550	0.47	+0.1
3,665,472	-	emrA	NIAGMN_18550	0.47	+0.5
3,665,472	-	emrA	NIAGMN_18550	0.47	-1.0
3,665,472	-	emrA	NIAGMN_18550	0.47	+2.7
3,665,547	+	emrA	NIAGMN_18550	0.54	+0.9
3,665,547	+	emrA	NIAGMN_18550	0.54	+0.7
3,665,547	+	emrA	NIAGMN_18550	0.54	-0.5
3,665,547	+	emrA	NIAGMN_18550	0.54	+1.0
3,665,548	-	emrA	NIAGMN_18550	0.54	-0.7
3,665,548	-	emrA	NIAGMN_18550	0.54	-0.1
3,665,662	-	emrA	NIAGMN_18550	0.64	+1.1
3,665,897	-	emrA	NIAGMN_18550	0.84	+2.2
3,665,897	-	emrA	NIAGMN_18550	0.84	+1.0
3,665,955	-	emrA	NIAGMN_18550	0.89	-1.5
3,666,088	+				-0.7
3,666,089	-				-1.7
3,666,089	-				-0.1
3,666,109	+				-0.8
3,666,109	+				-2.1
3,666,110	-				-1.0
3,666,110	-				+0.6
3,666,186	-				-0.9
3,666,516	-	emrR	NIAGMN_18555	0.57	-1.1
3,666,516	-	emrR	NIAGMN_18555	0.57	+0.7
3,666,516	-	emrR	NIAGMN_18555	0.57	+0.8
3,666,532	+	emrR	NIAGMN_18555	0.60	-0.1
3,666,533	-	emrR	NIAGMN_18555	0.60	-1.8
3,666,533	-	emrR	NIAGMN_18555	0.60	+2.7
3,666,560	-	emrR	NIAGMN_18555	0.65	-0.2
3,666,641	-	emrR	NIAGMN_18555	0.80	-0.8
3,666,641	-	emrR	NIAGMN_18555	0.80	-1.0
3,666,641	-	emrR	NIAGMN_18555	0.80	-3.1
3,666,641	-	emrR	NIAGMN_18555	0.80	+2.0
3,666,641	-	emrR	NIAGMN_18555	0.80	+0.3
3,666,711	-				-0.7
3,666,751	+				-0.2
3,666,776	-				-0.9
3,666,801	+				-0.5
3,666,801	+				-3.2
3,666,802	-				-2.4
3,666,802	-				-3.1
3,666,802	-				-2.6
3,666,807	+				-0.8
3,666,807	+				-2.4
3,666,808	-				-0.0
3,666,837	+				+0.2
3,666,837	+				-0.3
3,666,840	-				+1.2
3,666,840	-				+1.1
3,666,840	-				+0.4
3,666,840	-				-1.1
3,666,840	-				-2.4
3,666,840	-				+0.1
3,666,840	-				-0.1
3,666,841	+				+0.6
3,666,841	+				-1.0
3,666,841	+				-1.2
3,666,841	+				-2.5
3,666,842	-				+1.0
3,666,842	-				+1.6
3,666,871	-	ygaH	NIAGMN_18560	0.10	+0.0
3,666,871	-	ygaH	NIAGMN_18560	0.10	-2.1
3,666,871	-	ygaH	NIAGMN_18560	0.10	+1.4
3,666,883	+	ygaH	NIAGMN_18560	0.14	+0.0
3,666,884	-	ygaH	NIAGMN_18560	0.14	-2.1
3,666,902	-	ygaH	NIAGMN_18560	0.20	-1.8
3,666,935	+	ygaH	NIAGMN_18560	0.29	-1.0
3,666,973	+	ygaH	NIAGMN_18560	0.41	-1.1
3,666,973	+	ygaH	NIAGMN_18560	0.41	+0.3
3,666,973	+	ygaH	NIAGMN_18560	0.41	+0.5
3,666,973	+	ygaH	NIAGMN_18560	0.41	-1.3
3,666,974	-	ygaH	NIAGMN_18560	0.41	+1.9
3,666,998	-	ygaH	NIAGMN_18560	0.48	-1.3
3,667,051	+	ygaH	NIAGMN_18560	0.64	-1.8