Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18335

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,626,025	+	hypC	NIAGMN_18325	0.65	-1.3
3,626,113	-				+1.8
3,626,179	+				+0.1
3,626,179	+				-1.2
3,626,179	+				-1.5
3,626,180	-				+1.2
3,626,302	+	hypB	NIAGMN_18330	0.22	+0.3
3,626,302	+	hypB	NIAGMN_18330	0.22	+0.3
3,626,302	+	hypB	NIAGMN_18330	0.22	+2.2
3,626,303	-	hypB	NIAGMN_18330	0.22	+4.2
3,626,394	-	hypB	NIAGMN_18330	0.32	+0.6
3,626,425	+	hypB	NIAGMN_18330	0.36	+0.8
3,626,426	-	hypB	NIAGMN_18330	0.36	-0.1
3,626,610	-	hypB	NIAGMN_18330	0.57	+0.7
3,626,805	+	hypB	NIAGMN_18330	0.79	-1.3
3,626,855	-	hypB	NIAGMN_18330	0.85	-1.8
3,626,926	+				+0.9
3,626,926	+				-0.7
3,626,946	+				-1.4
3,626,946	+				-1.0
3,626,946	+				-0.1
3,626,947	-				+0.8
3,626,977	+				+0.4
3,626,977	+				-3.0
3,626,977	+				-3.6
3,626,977	+				-1.8
3,626,978	-				+1.2
3,626,999	+				-2.1
3,626,999	+				-1.0
3,626,999	+				-2.1
3,627,000	-				-1.0
3,627,000	-				+1.3
3,627,000	-				+1.9
3,627,021	-				-0.4
3,627,044	+	hypA	NIAGMN_18335	0.16	-1.3
3,627,045	-	hypA	NIAGMN_18335	0.17	+0.0
3,627,045	-	hypA	NIAGMN_18335	0.17	-0.6
3,627,045	-	hypA	NIAGMN_18335	0.17	+0.4
3,627,045	-	hypA	NIAGMN_18335	0.17	-1.5
3,627,045	-	hypA	NIAGMN_18335	0.17	-0.2
3,627,045	-	hypA	NIAGMN_18335	0.17	+0.5
3,627,102	+	hypA	NIAGMN_18335	0.33	+2.2
3,627,103	-	hypA	NIAGMN_18335	0.33	-3.3
3,627,103	-	hypA	NIAGMN_18335	0.33	+0.0
3,627,103	-	hypA	NIAGMN_18335	0.33	+1.2
3,627,103	-	hypA	NIAGMN_18335	0.33	-3.1
3,627,157	+	hypA	NIAGMN_18335	0.48	+2.3
3,627,158	-	hypA	NIAGMN_18335	0.49	-2.4
3,627,158	-	hypA	NIAGMN_18335	0.49	+0.1
3,627,261	-	hypA	NIAGMN_18335	0.78	-3.9
3,627,327	-				+2.7
3,627,354	+				-1.7
3,627,354	+				+0.4
3,627,354	+				+0.2
3,627,355	-				+0.6
3,627,355	-				+1.2
3,627,355	-				-1.1
3,627,355	-				-1.5
3,627,355	-				-2.6
3,627,476	+				-0.0
3,627,479	+				-1.1
3,627,554	+				-1.5
3,627,554	+				-2.9
3,627,555	-				+1.7
3,627,555	-				+1.5
3,627,565	+				-0.1
3,627,566	-				-1.7
3,627,582	+				+0.0
3,627,582	+				-1.1
3,627,582	+				-0.2
3,627,583	-				+1.3
3,627,627	+	hycA	NIAGMN_18340	0.17	+0.7
3,627,627	+	hycA	NIAGMN_18340	0.17	+0.8
3,627,627	+	hycA	NIAGMN_18340	0.17	+1.5
3,627,628	-	hycA	NIAGMN_18340	0.17	+0.1
3,627,628	-	hycA	NIAGMN_18340	0.17	+0.0
3,627,741	+	hycA	NIAGMN_18340	0.42	+2.7
3,627,741	+	hycA	NIAGMN_18340	0.42	+0.3
3,627,741	+	hycA	NIAGMN_18340	0.42	-1.0
3,627,741	+	hycA	NIAGMN_18340	0.42	-2.8
3,627,741	+	hycA	NIAGMN_18340	0.42	-0.3
3,627,741	+	hycA	NIAGMN_18340	0.42	-3.3
3,627,742	-	hycA	NIAGMN_18340	0.42	+2.2
3,627,742	-	hycA	NIAGMN_18340	0.42	+2.5
3,627,742	-	hycA	NIAGMN_18340	0.42	+0.4
3,627,783	+	hycA	NIAGMN_18340	0.51	+1.4
3,627,784	-	hycA	NIAGMN_18340	0.51	-2.9
3,627,786	+	hycA	NIAGMN_18340	0.51	+0.3
3,627,786	+	hycA	NIAGMN_18340	0.51	-0.3
3,627,786	+	hycA	NIAGMN_18340	0.51	-1.2
3,627,786	+	hycA	NIAGMN_18340	0.51	+4.6
3,627,786	+	hycA	NIAGMN_18340	0.51	+1.6
3,627,787	-	hycA	NIAGMN_18340	0.52	+1.1
3,627,903	+	hycA	NIAGMN_18340	0.77	+0.5
3,627,903	+	hycA	NIAGMN_18340	0.77	+1.3
3,627,903	+	hycA	NIAGMN_18340	0.77	+1.1
3,627,937	+	hycA	NIAGMN_18340	0.84	-2.2
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.9
3,627,937	+	hycA	NIAGMN_18340	0.84	+1.5
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.0
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.5
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.2
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.6
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.5
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.0
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.1
3,627,937	+	hycA	NIAGMN_18340	0.84	+1.0
3,627,937	+	hycA	NIAGMN_18340	0.84	-1.0
3,627,938	-	hycA	NIAGMN_18340	0.84	+1.7
3,627,938	-	hycA	NIAGMN_18340	0.84	+0.6
3,627,939	+	hycA	NIAGMN_18340	0.84	+0.4
3,627,939	+	hycA	NIAGMN_18340	0.84	-3.0
3,627,939	+	hycA	NIAGMN_18340	0.84	-2.4
3,627,939	+	hycA	NIAGMN_18340	0.84	+0.9
3,627,940	-	hycA	NIAGMN_18340	0.85	-0.5
3,627,940	-	hycA	NIAGMN_18340	0.85	-1.2
3,627,973	+				-1.3
3,627,973	+				-2.1
3,628,256	+	hycB	NIAGMN_18345	0.20	-0.3
3,628,256	+	hycB	NIAGMN_18345	0.20	-2.8
3,628,257	-	hycB	NIAGMN_18345	0.20	+0.5
3,628,257	-	hycB	NIAGMN_18345	0.20	-0.7
3,628,257	-	hycB	NIAGMN_18345	0.20	+1.0