Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16320

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,224,692	+				+1.1
3,224,703	+				+1.1
3,224,708	+				+2.8
3,224,708	+				-0.8
3,224,708	+				-3.3
3,224,709	-				-1.9
3,224,709	-				-1.2
3,224,710	+				+0.7
3,224,710	+				-0.8
3,224,710	+				-0.2
3,224,710	+				+1.4
3,224,710	+				+1.9
3,224,710	+				-3.8
3,224,710	+				+2.5
3,224,711	-				-2.3
3,224,711	-				+1.2
3,224,711	-				+0.1
3,224,714	+				-3.1
3,224,715	-				-2.4
3,224,781	+				-0.3
3,224,781	+				+1.5
3,224,781	+				+2.0
3,224,782	-				+0.8
3,224,782	-				-1.6
3,224,782	-				+2.3
3,224,787	-				-0.2
3,224,826	+				-0.3
3,224,826	+				+1.6
3,224,826	+				-2.7
3,224,826	+				-0.6
3,224,827	-				+0.1
3,224,827	-				-0.9
3,224,827	-				-0.2
3,224,827	-				-2.1
3,224,827	-				+0.1
3,224,827	-				+0.4
3,224,866	+				-2.1
3,224,866	+				+2.6
3,224,867	-				-0.3
3,224,907	-				-0.8
3,225,108	-	ygjQ	NIAGMN_16315	0.35	+0.4
3,225,117	-	ygjQ	NIAGMN_16315	0.36	+0.8
3,225,137	+	ygjQ	NIAGMN_16315	0.39	-0.9
3,225,138	-	ygjQ	NIAGMN_16315	0.39	-2.8
3,225,138	-	ygjQ	NIAGMN_16315	0.39	+0.2
3,225,179	-	ygjQ	NIAGMN_16315	0.45	+1.0
3,225,250	+	ygjQ	NIAGMN_16315	0.56	-2.1
3,225,257	+	ygjQ	NIAGMN_16315	0.57	+0.3
3,225,307	+	ygjQ	NIAGMN_16315	0.64	-0.1
3,225,307	+	ygjQ	NIAGMN_16315	0.64	+0.5
3,225,308	-	ygjQ	NIAGMN_16315	0.64	+0.2
3,225,308	-	ygjQ	NIAGMN_16315	0.64	+1.0
3,225,308	-	ygjQ	NIAGMN_16315	0.64	-3.5
3,225,329	+	ygjQ	NIAGMN_16315	0.67	+0.2
3,225,338	+	ygjQ	NIAGMN_16315	0.68	+0.9
3,225,344	-	ygjQ	NIAGMN_16315	0.69	+2.0
3,225,344	-	ygjQ	NIAGMN_16315	0.69	-1.1
3,225,372	+	ygjQ	NIAGMN_16315	0.73	+1.5
3,225,373	-	ygjQ	NIAGMN_16315	0.73	-0.4
3,225,373	-	ygjQ	NIAGMN_16315	0.73	-0.1
3,225,456	-	ygjQ	NIAGMN_16315	0.85	+3.6
3,225,480	+	ygjQ	NIAGMN_16315	0.89	-0.8
3,225,481	-	ygjQ	NIAGMN_16315	0.89	-1.1
3,225,481	-	ygjQ	NIAGMN_16315	0.89	-0.2
3,225,481	-	ygjQ	NIAGMN_16315	0.89	+0.6
3,225,481	-	ygjQ	NIAGMN_16315	0.89	-0.6
3,225,481	-	ygjQ	NIAGMN_16315	0.89	+1.0
3,225,486	+	ygjQ	NIAGMN_16315	0.90	-2.4
3,225,487	-	ygjQ	NIAGMN_16315	0.90	-1.8
3,225,487	-	ygjQ	NIAGMN_16315	0.90	-0.2
3,225,525	-				+0.4
3,225,595	-				+1.6
3,225,701	+	ygjP	NIAGMN_16320	0.13	+2.0
3,225,714	+	ygjP	NIAGMN_16320	0.16	+2.4
3,225,714	+	ygjP	NIAGMN_16320	0.16	+1.3
3,225,714	+	ygjP	NIAGMN_16320	0.16	+3.0
3,225,715	-	ygjP	NIAGMN_16320	0.16	+0.2
3,225,715	-	ygjP	NIAGMN_16320	0.16	+0.3
3,225,715	-	ygjP	NIAGMN_16320	0.16	+0.1
3,225,731	+	ygjP	NIAGMN_16320	0.19	+2.1
3,225,744	+	ygjP	NIAGMN_16320	0.22	-1.9
3,225,744	+	ygjP	NIAGMN_16320	0.22	-0.4
3,225,745	-	ygjP	NIAGMN_16320	0.22	-3.2
3,225,886	-	ygjP	NIAGMN_16320	0.50	+3.2
3,225,886	-	ygjP	NIAGMN_16320	0.50	-1.0
3,225,886	-	ygjP	NIAGMN_16320	0.50	+0.4
3,225,886	-	ygjP	NIAGMN_16320	0.50	+0.6
3,225,886	-	ygjP	NIAGMN_16320	0.50	+1.3
3,225,890	-	ygjP	NIAGMN_16320	0.51	+3.0
3,225,921	+	ygjP	NIAGMN_16320	0.57	+2.7
3,225,921	+	ygjP	NIAGMN_16320	0.57	+0.5
3,225,929	+	ygjP	NIAGMN_16320	0.59	+3.2
3,225,929	+	ygjP	NIAGMN_16320	0.59	-3.4
3,225,930	-	ygjP	NIAGMN_16320	0.59	-0.2
3,225,930	-	ygjP	NIAGMN_16320	0.59	-1.2
3,225,930	-	ygjP	NIAGMN_16320	0.59	-2.5
3,225,930	-	ygjP	NIAGMN_16320	0.59	-0.2
3,225,930	-	ygjP	NIAGMN_16320	0.59	+0.2
3,225,930	-	ygjP	NIAGMN_16320	0.59	-2.7
3,225,987	+	ygjP	NIAGMN_16320	0.70	+0.4
3,225,987	+	ygjP	NIAGMN_16320	0.70	-1.3
3,225,987	+	ygjP	NIAGMN_16320	0.70	-0.7
3,225,988	-	ygjP	NIAGMN_16320	0.70	-0.0
3,226,016	+	ygjP	NIAGMN_16320	0.76	-2.3
3,226,110	-				+0.7
3,226,122	-				+0.9
3,226,122	-				-4.1
3,226,122	-				+0.3
3,226,122	-				+0.1
3,226,125	+				+0.7
3,226,125	+				-0.2
3,226,125	+				+2.3
3,226,125	+				-0.0
3,226,125	+				-4.1
3,226,126	-				+1.0
3,226,126	-				-1.0
3,226,126	-				+0.9
3,226,126	-				-0.6
3,226,126	-				-1.7
3,226,126	-				+0.0
3,226,126	-				-2.0
3,226,126	-				+0.8
3,226,126	-				+2.5
3,226,138	-				-0.5
3,226,165	+				-1.2
3,226,167	+				-1.2
3,226,168	-				-0.8
3,226,232	+				+0.4
3,226,232	+				+2.1
3,226,233	-				-0.5
3,226,259	+				-0.7
3,226,321	+				-2.7
3,226,321	+				-3.5
3,226,321	+				+1.3
3,226,416	+	rlmG	NIAGMN_16325	0.17	+0.1
3,226,416	+	rlmG	NIAGMN_16325	0.17	-0.1
3,226,416	+	rlmG	NIAGMN_16325	0.17	+0.5
3,226,416	+	rlmG	NIAGMN_16325	0.17	-4.0
3,226,417	-	rlmG	NIAGMN_16325	0.17	+2.0
3,226,417	-	rlmG	NIAGMN_16325	0.17	+1.0
3,226,417	-	rlmG	NIAGMN_16325	0.17	+3.0
3,226,423	+	rlmG	NIAGMN_16325	0.18	+0.3
3,226,441	+	rlmG	NIAGMN_16325	0.19	+0.4
3,226,441	+	rlmG	NIAGMN_16325	0.19	-0.1
3,226,441	+	rlmG	NIAGMN_16325	0.19	+2.7
3,226,441	+	rlmG	NIAGMN_16325	0.19	-0.1
3,226,441	+	rlmG	NIAGMN_16325	0.19	-2.7
3,226,441	+	rlmG	NIAGMN_16325	0.19	-0.4
3,226,442	-	rlmG	NIAGMN_16325	0.19	-2.8
3,226,442	-	rlmG	NIAGMN_16325	0.19	-1.4
3,226,442	-	rlmG	NIAGMN_16325	0.19	+0.4
3,226,632	+	rlmG	NIAGMN_16325	0.36	-0.1
3,226,632	+	rlmG	NIAGMN_16325	0.36	-1.0
3,226,633	-	rlmG	NIAGMN_16325	0.36	-0.0
3,226,635	+	rlmG	NIAGMN_16325	0.36	-0.8
3,226,635	+	rlmG	NIAGMN_16325	0.36	-1.7
3,226,636	-	rlmG	NIAGMN_16325	0.36	-0.2
3,226,682	+	rlmG	NIAGMN_16325	0.40	-2.1
3,226,743	+	rlmG	NIAGMN_16325	0.46	+1.4
3,226,744	-	rlmG	NIAGMN_16325	0.46	-0.4
3,226,744	-	rlmG	NIAGMN_16325	0.46	-3.7
3,226,809	+	rlmG	NIAGMN_16325	0.52	-1.0
3,226,809	+	rlmG	NIAGMN_16325	0.52	-0.6
3,226,810	-	rlmG	NIAGMN_16325	0.52	+2.0
3,226,822	-	rlmG	NIAGMN_16325	0.53	+0.3
3,226,944	+	rlmG	NIAGMN_16325	0.64	-0.4
3,227,077	-	rlmG	NIAGMN_16325	0.75	+3.3
3,227,118	+	rlmG	NIAGMN_16325	0.79	-2.0
3,227,118	+	rlmG	NIAGMN_16325	0.79	-0.2
3,227,119	-	rlmG	NIAGMN_16325	0.79	+0.6