Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15675

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,109,321	+	elbB	NIAGMN_15665	0.62	+0.7
3,109,321	+	elbB	NIAGMN_15665	0.62	-0.4
3,109,321	+	elbB	NIAGMN_15665	0.62	+3.0
3,109,321	+	elbB	NIAGMN_15665	0.62	+0.3
3,109,321	+	elbB	NIAGMN_15665	0.62	-1.6
3,109,322	-	elbB	NIAGMN_15665	0.62	+0.0
3,109,378	+	elbB	NIAGMN_15665	0.70	-0.4
3,109,468	+	elbB	NIAGMN_15665	0.84	+0.2
3,109,469	-	elbB	NIAGMN_15665	0.84	-1.8
3,109,490	+	elbB	NIAGMN_15665	0.88	+0.2
3,109,490	+	elbB	NIAGMN_15665	0.88	+0.4
3,109,491	-	elbB	NIAGMN_15665	0.88	-2.8
3,109,491	-	elbB	NIAGMN_15665	0.88	+1.5
3,109,491	-	elbB	NIAGMN_15665	0.88	+2.0
3,109,491	-	elbB	NIAGMN_15665	0.88	-0.3
3,109,492	+	elbB	NIAGMN_15665	0.88	-2.1
3,109,492	+	elbB	NIAGMN_15665	0.88	-1.0
3,109,492	+	elbB	NIAGMN_15665	0.88	-1.1
3,109,492	+	elbB	NIAGMN_15665	0.88	+1.0
3,109,492	+	elbB	NIAGMN_15665	0.88	+1.2
3,109,492	+	elbB	NIAGMN_15665	0.88	-1.4
3,109,492	+	elbB	NIAGMN_15665	0.88	+0.6
3,109,492	+	elbB	NIAGMN_15665	0.88	+0.3
3,109,492	+	elbB	NIAGMN_15665	0.88	-2.9
3,109,492	+	elbB	NIAGMN_15665	0.88	+0.6
3,109,492	+	elbB	NIAGMN_15665	0.88	+0.4
3,109,493	-	elbB	NIAGMN_15665	0.88	-2.0
3,109,493	-	elbB	NIAGMN_15665	0.88	+2.1
3,109,493	-	elbB	NIAGMN_15665	0.88	-2.9
3,109,493	-	elbB	NIAGMN_15665	0.88	-1.4
3,109,493	-	elbB	NIAGMN_15665	0.88	-0.6
3,109,493	-	elbB	NIAGMN_15665	0.88	-0.4
3,109,493	-	elbB	NIAGMN_15665	0.88	-2.8
3,109,493	-	elbB	NIAGMN_15665	0.88	+3.0
3,109,493	-	elbB	NIAGMN_15665	0.88	+0.7
3,109,493	-	elbB	NIAGMN_15665	0.88	+1.4
3,109,493	-	elbB	NIAGMN_15665	0.88	-2.8
3,109,534	+				+1.1
3,109,534	+				+1.3
3,109,534	+				-2.4
3,109,534	+				-0.4
3,109,535	-				-0.7
3,109,535	-				-1.6
3,109,593	+				-2.0
3,109,593	+				-3.9
3,109,593	+				+0.8
3,109,668	+	mtgA	NIAGMN_15670	0.14	+0.5
3,109,734	+	mtgA	NIAGMN_15670	0.23	+0.8
3,109,744	+	mtgA	NIAGMN_15670	0.24	-0.0
3,109,745	-	mtgA	NIAGMN_15670	0.24	+0.6
3,110,009	+	mtgA	NIAGMN_15670	0.61	-1.1
3,110,009	+	mtgA	NIAGMN_15670	0.61	+2.2
3,110,107	+	mtgA	NIAGMN_15670	0.74	+0.0
3,110,108	-	mtgA	NIAGMN_15670	0.74	+1.1
3,110,108	-	mtgA	NIAGMN_15670	0.74	+0.8
3,110,133	+	mtgA	NIAGMN_15670	0.78	-2.4
3,110,134	-	mtgA	NIAGMN_15670	0.78	-0.4
3,110,134	-	mtgA	NIAGMN_15670	0.78	+0.7
3,110,154	-	mtgA	NIAGMN_15670	0.81	-1.2
3,110,165	+	mtgA	NIAGMN_15670	0.82	-2.5
3,110,166	-	mtgA	NIAGMN_15670	0.82	-0.4
3,110,166	-	mtgA	NIAGMN_15670	0.82	-3.5
3,110,166	-	mtgA	NIAGMN_15670	0.82	-0.3
3,110,168	+	mtgA	NIAGMN_15670	0.82	-0.6
3,110,168	+	mtgA	NIAGMN_15670	0.82	-1.8
3,110,168	+	mtgA	NIAGMN_15670	0.82	+1.1
3,110,168	+	mtgA	NIAGMN_15670	0.82	+0.9
3,110,169	-	mtgA	NIAGMN_15670	0.83	+0.8
3,110,169	-	mtgA	NIAGMN_15670	0.83	-1.5
3,110,169	-	mtgA	NIAGMN_15670	0.83	+2.4
3,110,169	-	mtgA	NIAGMN_15670	0.83	-2.1
3,110,169	-	mtgA	NIAGMN_15670	0.83	-2.9
3,110,173	-	mtgA	NIAGMN_15670	0.83	-0.9
3,110,173	-	mtgA	NIAGMN_15670	0.83	+0.4
3,110,173	-	mtgA	NIAGMN_15670	0.83	+1.1
3,110,248	+				+0.7
3,110,248	+				-1.2
3,110,248	+				-0.1
3,110,249	-				-1.3
3,110,249	-				+0.3
3,110,249	-				+0.4
3,110,249	-				+1.6
3,110,249	-				+2.0
3,110,249	-				+0.0
3,110,272	-				+1.2
3,110,272	-				+0.0
3,110,294	-				+0.4
3,110,381	+	yrbL	NIAGMN_15675	0.14	+2.6
3,110,381	+	yrbL	NIAGMN_15675	0.14	+0.0
3,110,408	+	yrbL	NIAGMN_15675	0.18	-0.1
3,110,408	+	yrbL	NIAGMN_15675	0.18	+3.1
3,110,409	-	yrbL	NIAGMN_15675	0.18	+3.1
3,110,501	+	yrbL	NIAGMN_15675	0.33	-3.0
3,110,618	-	yrbL	NIAGMN_15675	0.52	-1.2
3,110,687	-	yrbL	NIAGMN_15675	0.62	-2.2
3,110,687	-	yrbL	NIAGMN_15675	0.62	+0.4
3,110,687	-	yrbL	NIAGMN_15675	0.62	-2.8
3,110,729	-	yrbL	NIAGMN_15675	0.69	-1.6
3,110,737	-	yrbL	NIAGMN_15675	0.70	-3.6
3,110,780	-	yrbL	NIAGMN_15675	0.77	-1.7
3,110,785	-	yrbL	NIAGMN_15675	0.78	-2.8
3,110,785	-	yrbL	NIAGMN_15675	0.78	-0.9
3,110,785	-	yrbL	NIAGMN_15675	0.78	+0.4
3,110,785	-	yrbL	NIAGMN_15675	0.78	+2.0
3,110,785	-	yrbL	NIAGMN_15675	0.78	+0.0
3,110,804	+	yrbL	NIAGMN_15675	0.81	+1.6
3,110,913	+				-0.6
3,110,914	-				+1.2
3,110,940	+				-0.5
3,110,971	-				-2.8
3,111,000	+				+0.4
3,111,119	+				+1.4
3,111,119	+				+0.4
3,111,120	-				+2.1
3,111,161	+				+3.6
3,111,162	-				-2.5
3,111,162	-				+2.8
3,111,299	+	npr	NIAGMN_15680	0.59	-1.6
3,111,299	+	npr	NIAGMN_15680	0.59	+1.5
3,111,299	+	npr	NIAGMN_15680	0.59	+1.2
3,111,300	-	npr	NIAGMN_15680	0.59	-2.9
3,111,300	-	npr	NIAGMN_15680	0.59	-0.1
3,111,300	-	npr	NIAGMN_15680	0.59	-3.3
3,111,303	+	npr	NIAGMN_15680	0.60	-0.3
3,111,303	+	npr	NIAGMN_15680	0.60	+1.7
3,111,304	-	npr	NIAGMN_15680	0.61	+1.3
3,111,333	+	npr	NIAGMN_15680	0.71	+3.5
3,111,333	+	npr	NIAGMN_15680	0.71	+2.4
3,111,471	+				-1.8
3,111,471	+				-0.3
3,111,494	-	rapZ	NIAGMN_15685	0.10	-1.7
3,111,495	+	rapZ	NIAGMN_15685	0.10	-4.0
3,111,495	+	rapZ	NIAGMN_15685	0.10	-0.9
3,111,495	+	rapZ	NIAGMN_15685	0.10	+0.0
3,111,496	-	rapZ	NIAGMN_15685	0.10	+1.5
3,111,543	+	rapZ	NIAGMN_15685	0.16	-0.2
3,111,543	+	rapZ	NIAGMN_15685	0.16	-0.2
3,111,544	-	rapZ	NIAGMN_15685	0.16	-0.7
3,111,547	+	rapZ	NIAGMN_15685	0.16	+1.0
3,111,548	-	rapZ	NIAGMN_15685	0.16	-0.4
3,111,548	-	rapZ	NIAGMN_15685	0.16	-1.2
3,111,548	-	rapZ	NIAGMN_15685	0.16	+2.2
3,111,568	+	rapZ	NIAGMN_15685	0.19	-1.7
3,111,568	+	rapZ	NIAGMN_15685	0.19	-0.3
3,111,568	+	rapZ	NIAGMN_15685	0.19	-1.9
3,111,569	-	rapZ	NIAGMN_15685	0.19	-0.2
3,111,569	-	rapZ	NIAGMN_15685	0.19	-1.1
3,111,569	-	rapZ	NIAGMN_15685	0.19	-2.9
3,111,573	-	rapZ	NIAGMN_15685	0.19	-0.2
3,111,573	-	rapZ	NIAGMN_15685	0.19	-1.4
3,111,578	+	rapZ	NIAGMN_15685	0.20	-0.3
3,111,578	+	rapZ	NIAGMN_15685	0.20	+0.0
3,111,579	-	rapZ	NIAGMN_15685	0.20	-1.6
3,111,579	-	rapZ	NIAGMN_15685	0.20	-0.2
3,111,579	-	rapZ	NIAGMN_15685	0.20	-2.0
3,111,579	-	rapZ	NIAGMN_15685	0.20	+0.4
3,111,579	-	rapZ	NIAGMN_15685	0.20	-0.3
3,111,588	+	rapZ	NIAGMN_15685	0.21	+1.0
3,111,588	+	rapZ	NIAGMN_15685	0.21	-1.4
3,111,603	+	rapZ	NIAGMN_15685	0.23	+0.2
3,111,604	-	rapZ	NIAGMN_15685	0.23	+0.3
3,111,608	-	rapZ	NIAGMN_15685	0.24	-1.8
3,111,617	+	rapZ	NIAGMN_15685	0.25	-1.3
3,111,727	-	rapZ	NIAGMN_15685	0.37	-0.0
3,111,727	-	rapZ	NIAGMN_15685	0.37	-1.6