Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14120

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,811,324	+	chuA	NIAGMN_14115	0.52	+0.2
2,811,324	+	chuA	NIAGMN_14115	0.52	+1.0
2,811,324	+	chuA	NIAGMN_14115	0.52	-0.3
2,811,324	+	chuA	NIAGMN_14115	0.52	-0.8
2,811,324	+	chuA	NIAGMN_14115	0.52	-0.5
2,811,325	-	chuA	NIAGMN_14115	0.52	-1.1
2,811,325	-	chuA	NIAGMN_14115	0.52	+1.1
2,811,325	-	chuA	NIAGMN_14115	0.52	-2.6
2,811,327	+	chuA	NIAGMN_14115	0.52	-1.7
2,811,328	-	chuA	NIAGMN_14115	0.53	+1.1
2,811,404	-	chuA	NIAGMN_14115	0.56	+0.2
2,811,459	+	chuA	NIAGMN_14115	0.59	+2.3
2,811,459	+	chuA	NIAGMN_14115	0.59	-0.2
2,811,469	-	chuA	NIAGMN_14115	0.60	-0.6
2,811,476	+	chuA	NIAGMN_14115	0.60	-1.3
2,811,536	+	chuA	NIAGMN_14115	0.63	-0.7
2,811,537	-	chuA	NIAGMN_14115	0.63	-0.4
2,811,549	-	chuA	NIAGMN_14115	0.64	+3.5
2,811,562	+	chuA	NIAGMN_14115	0.64	+2.5
2,811,563	-	chuA	NIAGMN_14115	0.64	+0.1
2,811,573	+	chuA	NIAGMN_14115	0.65	-0.6
2,811,574	-	chuA	NIAGMN_14115	0.65	-1.0
2,811,574	-	chuA	NIAGMN_14115	0.65	+0.1
2,811,613	-	chuA	NIAGMN_14115	0.67	-0.4
2,811,613	-	chuA	NIAGMN_14115	0.67	+0.6
2,811,614	+	chuA	NIAGMN_14115	0.67	-0.5
2,811,648	+	chuA	NIAGMN_14115	0.69	+0.1
2,811,648	+	chuA	NIAGMN_14115	0.69	+0.5
2,811,649	-	chuA	NIAGMN_14115	0.69	+0.1
2,811,657	+	chuA	NIAGMN_14115	0.69	-2.0
2,811,679	+	chuA	NIAGMN_14115	0.70	-2.3
2,811,679	+	chuA	NIAGMN_14115	0.70	-2.0
2,811,680	-	chuA	NIAGMN_14115	0.70	+0.1
2,811,680	-	chuA	NIAGMN_14115	0.70	+0.4
2,811,680	-	chuA	NIAGMN_14115	0.70	+0.0
2,811,680	-	chuA	NIAGMN_14115	0.70	-2.0
2,811,709	-	chuA	NIAGMN_14115	0.72	+0.2
2,811,775	-	chuA	NIAGMN_14115	0.75	+0.1
2,811,775	-	chuA	NIAGMN_14115	0.75	+1.1
2,811,775	-	chuA	NIAGMN_14115	0.75	+1.3
2,811,798	+	chuA	NIAGMN_14115	0.76	+0.7
2,811,798	+	chuA	NIAGMN_14115	0.76	-2.2
2,811,798	+	chuA	NIAGMN_14115	0.76	-1.2
2,811,798	+	chuA	NIAGMN_14115	0.76	-0.4
2,811,798	+	chuA	NIAGMN_14115	0.76	-0.5
2,811,799	-	chuA	NIAGMN_14115	0.76	+0.7
2,811,799	-	chuA	NIAGMN_14115	0.76	+0.5
2,811,836	+	chuA	NIAGMN_14115	0.78	-0.7
2,811,836	+	chuA	NIAGMN_14115	0.78	-2.4
2,811,836	+	chuA	NIAGMN_14115	0.78	-2.4
2,811,836	+	chuA	NIAGMN_14115	0.78	-0.6
2,811,836	+	chuA	NIAGMN_14115	0.78	+0.8
2,811,837	-	chuA	NIAGMN_14115	0.78	+2.9
2,811,837	-	chuA	NIAGMN_14115	0.78	-1.8
2,811,837	-	chuA	NIAGMN_14115	0.78	-0.1
2,811,843	+	chuA	NIAGMN_14115	0.79	-0.5
2,811,843	+	chuA	NIAGMN_14115	0.79	-0.6
2,811,843	+	chuA	NIAGMN_14115	0.79	+2.5
2,811,843	+	chuA	NIAGMN_14115	0.79	-1.7
2,811,843	+	chuA	NIAGMN_14115	0.79	-0.9
2,811,843	+	chuA	NIAGMN_14115	0.79	+0.4
2,811,843	+	chuA	NIAGMN_14115	0.79	-0.0
2,811,843	+	chuA	NIAGMN_14115	0.79	-1.3
2,811,844	-	chuA	NIAGMN_14115	0.79	+1.1
2,811,844	-	chuA	NIAGMN_14115	0.79	+2.7
2,811,844	-	chuA	NIAGMN_14115	0.79	+1.7
2,811,844	-	chuA	NIAGMN_14115	0.79	+0.2
2,811,891	+	chuA	NIAGMN_14115	0.81	-0.7
2,811,893	+	chuA	NIAGMN_14115	0.81	+1.3
2,811,893	+	chuA	NIAGMN_14115	0.81	+1.2
2,811,924	+	chuA	NIAGMN_14115	0.83	-2.8
2,811,924	+	chuA	NIAGMN_14115	0.83	-0.3
2,811,925	-	chuA	NIAGMN_14115	0.83	+0.7
2,811,963	+	chuA	NIAGMN_14115	0.85	-0.9
2,811,963	+	chuA	NIAGMN_14115	0.85	-1.5
2,811,963	+	chuA	NIAGMN_14115	0.85	-0.7
2,811,963	+	chuA	NIAGMN_14115	0.85	+0.1
2,811,963	+	chuA	NIAGMN_14115	0.85	+2.0
2,811,964	-	chuA	NIAGMN_14115	0.85	+1.4
2,811,964	-	chuA	NIAGMN_14115	0.85	-2.6
2,811,992	+	chuA	NIAGMN_14115	0.86	+0.3
2,811,992	+	chuA	NIAGMN_14115	0.86	+0.1
2,812,049	+	chuA	NIAGMN_14115	0.89	-0.5
2,812,050	-	chuA	NIAGMN_14115	0.89	-1.1
2,812,050	-	chuA	NIAGMN_14115	0.89	+1.9
2,812,073	+				+0.0
2,812,074	-				+0.4
2,812,074	-				-0.3
2,812,074	-				-0.2
2,812,074	-				-1.1
2,812,074	-				-0.8
2,812,074	-				-3.1
2,812,086	+				-1.9
2,812,087	-				-2.3
2,812,087	-				+0.1
2,812,087	-				-0.6
2,812,122	+				+2.0
2,812,122	+				+0.8
2,812,122	+				-2.5
2,812,123	-				-0.0
2,812,132	-				+1.1
2,812,132	-				-2.3
2,812,166	+				+0.8
2,812,167	-				-0.0
2,812,200	+				-3.4
2,812,257	+				-2.3
2,812,257	+				-0.1
2,812,258	-				+0.8
2,812,266	+				-0.3
2,812,267	-				+0.6
2,812,267	-				+2.1
2,812,267	-				+2.6
2,812,296	+				-3.4
2,812,296	+				+0.5
2,812,326	+				-1.5
2,812,327	-				+0.3
2,812,327	-				-1.6
2,812,346	-				+1.5
2,812,368	+				+0.6
2,812,368	+				+0.2
2,812,369	-				+2.1
2,812,369	-				+0.0
2,812,397	+				-0.3
2,812,398	-				-0.7
2,812,398	-				+0.6
2,812,398	-				+2.5
2,812,398	-				+0.5
2,812,400	+				-2.3
2,812,401	-				+0.4
2,812,401	-				+1.0
2,812,508	+	chuS	NIAGMN_14120	0.19	+2.3
2,812,508	+	chuS	NIAGMN_14120	0.19	-0.4
2,812,508	+	chuS	NIAGMN_14120	0.19	-0.9
2,812,509	-	chuS	NIAGMN_14120	0.19	-1.8
2,812,509	-	chuS	NIAGMN_14120	0.19	+0.8
2,812,509	-	chuS	NIAGMN_14120	0.19	-2.7
2,812,517	+	chuS	NIAGMN_14120	0.19	+0.7
2,812,517	+	chuS	NIAGMN_14120	0.19	+1.1
2,812,518	-	chuS	NIAGMN_14120	0.20	-2.4
2,812,518	-	chuS	NIAGMN_14120	0.20	-0.7
2,812,524	+	chuS	NIAGMN_14120	0.20	+1.4
2,812,525	-	chuS	NIAGMN_14120	0.20	+2.3
2,812,525	-	chuS	NIAGMN_14120	0.20	+1.8
2,812,547	+	chuS	NIAGMN_14120	0.22	+1.2
2,812,547	+	chuS	NIAGMN_14120	0.22	+0.9
2,812,547	+	chuS	NIAGMN_14120	0.22	+0.9
2,812,547	+	chuS	NIAGMN_14120	0.22	-1.1
2,812,548	-	chuS	NIAGMN_14120	0.22	+1.3
2,812,612	+	chuS	NIAGMN_14120	0.29	-1.3
2,812,612	+	chuS	NIAGMN_14120	0.29	+0.3
2,812,612	+	chuS	NIAGMN_14120	0.29	-1.7
2,812,612	+	chuS	NIAGMN_14120	0.29	+1.3
2,812,613	-	chuS	NIAGMN_14120	0.29	+1.6
2,812,686	-	chuS	NIAGMN_14120	0.36	-2.3
2,812,717	+	chuS	NIAGMN_14120	0.39	+0.3
2,812,717	+	chuS	NIAGMN_14120	0.39	-1.5
2,812,721	-	chuS	NIAGMN_14120	0.39	-2.0
2,812,721	-	chuS	NIAGMN_14120	0.39	+3.5
2,812,781	+	chuS	NIAGMN_14120	0.45	-1.7
2,812,797	-	chuS	NIAGMN_14120	0.47	-2.7
2,812,811	-	chuS	NIAGMN_14120	0.48	+1.5
2,812,979	-	chuS	NIAGMN_14120	0.64	-0.8
2,813,028	-	chuS	NIAGMN_14120	0.69	+0.3
2,813,028	-	chuS	NIAGMN_14120	0.69	-1.5
2,813,138	+	chuS	NIAGMN_14120	0.80	+0.0
2,813,138	+	chuS	NIAGMN_14120	0.80	+0.7
2,813,149	+	chuS	NIAGMN_14120	0.81	-4.6
2,813,152	+	chuS	NIAGMN_14120	0.81	-0.2
2,813,153	-	chuS	NIAGMN_14120	0.81	+1.1
2,813,153	-	chuS	NIAGMN_14120	0.81	-1.0
2,813,209	+	chuS	NIAGMN_14120	0.87	-0.6
2,813,209	+	chuS	NIAGMN_14120	0.87	-0.0
2,813,210	-	chuS	NIAGMN_14120	0.87	+2.7
2,813,248	+				+1.5
2,813,260	-				+1.0
2,813,271	-				-0.2
2,813,271	-				-2.7
2,813,303	+				-2.0
2,813,348	+				+0.1
2,813,348	+				-2.4
2,813,348	+				+0.2
2,813,349	-				-2.1
2,813,349	-				-2.6
2,813,349	-				+0.8
2,813,349	-				-0.7
2,813,375	-				+0.9
2,813,375	-				+0.2
2,813,393	-				+0.1
2,813,416	+				+2.4
2,813,417	-				+0.5
2,813,423	+				+1.3
2,813,478	-	dctR	NIAGMN_14125	0.14	+2.0
2,813,494	+	dctR	NIAGMN_14125	0.17	+0.9
2,813,531	+	dctR	NIAGMN_14125	0.24	+1.6
2,813,620	+	dctR	NIAGMN_14125	0.40	+0.8
2,813,620	+	dctR	NIAGMN_14125	0.40	+0.9
2,813,621	-	dctR	NIAGMN_14125	0.40	-0.1
2,813,654	+	dctR	NIAGMN_14125	0.47	-0.4
2,813,711	+	dctR	NIAGMN_14125	0.57	+1.0
2,813,712	-	dctR	NIAGMN_14125	0.58	+0.1
2,813,832	+	dctR	NIAGMN_14125	0.80	+2.3
2,813,832	+	dctR	NIAGMN_14125	0.80	+2.6
2,813,859	-	dctR	NIAGMN_14125	0.85	-0.8
2,813,871	-	dctR	NIAGMN_14125	0.88	+1.3
2,813,871	-	dctR	NIAGMN_14125	0.88	+1.2
2,813,913	-				+1.2
2,813,922	-				+1.6
2,813,927	+				+1.4
2,813,936	+				+1.0
2,813,959	+				+0.1
2,813,989	+				-0.5
2,813,989	+				+2.6
2,814,007	-				+0.1
2,814,009	+				+1.0
2,814,012	+				+2.2
2,814,044	+				-1.4
2,814,094	-				+2.5
2,814,114	-				-3.2
2,814,135	+				+1.9
2,814,136	-				-0.8
2,814,136	-				-1.1
2,814,136	-				+0.9
2,814,136	-				-1.0
2,814,136	-				+0.4
2,814,139	-				+0.1
2,814,139	-				+0.8
2,814,178	-	slp	NIAGMN_14130	0.15	+1.1
2,814,205	+	slp	NIAGMN_14130	0.20	-0.0
2,814,206	-	slp	NIAGMN_14130	0.20	-0.5
2,814,206	-	slp	NIAGMN_14130	0.20	+2.7
2,814,247	+	slp	NIAGMN_14130	0.27	+1.5
2,814,265	+	slp	NIAGMN_14130	0.31	+2.3
2,814,265	+	slp	NIAGMN_14130	0.31	-0.6
2,814,266	-	slp	NIAGMN_14130	0.31	+1.4
2,814,268	-	slp	NIAGMN_14130	0.31	+3.6
2,814,284	-	slp	NIAGMN_14130	0.34	+2.3
2,814,322	+	slp	NIAGMN_14130	0.41	-0.5
2,814,322	+	slp	NIAGMN_14130	0.41	+0.9
2,814,340	-	slp	NIAGMN_14130	0.44	+0.6