Strain Fitness in Escherichia coli ECRC102 around NIAGMN_13365

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,641,851	+	rph	NIAGMN_13350	0.74	+1.1
2,641,851	+	rph	NIAGMN_13350	0.74	+1.1
2,641,851	+	rph	NIAGMN_13350	0.74	-1.3
2,641,851	+	rph	NIAGMN_13350	0.74	-0.6
2,641,852	-	rph	NIAGMN_13350	0.74	-1.4
2,641,889	-	rph	NIAGMN_13350	0.79	+0.2
2,641,963	+	rph	NIAGMN_13350	0.89	+1.0
2,641,963	+	rph	NIAGMN_13350	0.89	+0.3
2,641,964	-	rph	NIAGMN_13350	0.89	-1.1
2,642,008	+				+3.0
2,642,008	+				+1.3
2,642,009	-				-1.0
2,642,078	+	pyrL	NIAGMN_13355	0.59	-1.3
2,642,078	+	pyrL	NIAGMN_13355	0.59	-0.4
2,642,078	+	pyrL	NIAGMN_13355	0.59	-1.4
2,642,079	-	pyrL	NIAGMN_13355	0.62	-3.0
2,642,087	-	pyrL	NIAGMN_13355	0.82	-2.1
2,642,087	-	pyrL	NIAGMN_13355	0.82	+0.7
2,642,087	-	pyrL	NIAGMN_13355	0.82	-1.3
2,642,087	-	pyrL	NIAGMN_13355	0.82	-0.7
2,642,114	+				-0.7
2,642,115	-				-1.9
2,642,115	-				-1.8
2,642,128	+				-1.0
2,642,157	+				-1.1
2,642,173	+	pyrE	NIAGMN_13360	0.11	-1.8
2,642,174	-	pyrE	NIAGMN_13360	0.11	-3.4
2,642,250	+	pyrE	NIAGMN_13360	0.23	-2.5
2,642,251	-	pyrE	NIAGMN_13360	0.23	-2.9
2,642,318	+	pyrE	NIAGMN_13360	0.33	-3.0
2,642,318	+	pyrE	NIAGMN_13360	0.33	-1.7
2,642,318	+	pyrE	NIAGMN_13360	0.33	-3.2
2,642,319	-	pyrE	NIAGMN_13360	0.33	+0.4
2,642,319	-	pyrE	NIAGMN_13360	0.33	+0.2
2,642,319	-	pyrE	NIAGMN_13360	0.33	-4.0
2,642,319	-	pyrE	NIAGMN_13360	0.33	-2.1
2,642,387	+	pyrE	NIAGMN_13360	0.44	-3.0
2,642,395	+	pyrE	NIAGMN_13360	0.45	-2.0
2,642,451	+	pyrE	NIAGMN_13360	0.54	-0.7
2,642,452	-	pyrE	NIAGMN_13360	0.54	-3.3
2,642,463	+	pyrE	NIAGMN_13360	0.56	-3.7
2,642,464	-	pyrE	NIAGMN_13360	0.56	-3.6
2,642,464	-	pyrE	NIAGMN_13360	0.56	-1.2
2,642,472	+	pyrE	NIAGMN_13360	0.57	-1.9
2,642,472	+	pyrE	NIAGMN_13360	0.57	-1.7
2,642,473	-	pyrE	NIAGMN_13360	0.57	-3.7
2,642,473	-	pyrE	NIAGMN_13360	0.57	-2.1
2,642,473	-	pyrE	NIAGMN_13360	0.57	-2.4
2,642,624	+	pyrE	NIAGMN_13360	0.81	+0.4
2,642,624	+	pyrE	NIAGMN_13360	0.81	-0.6
2,642,624	+	pyrE	NIAGMN_13360	0.81	-3.1
2,642,625	-	pyrE	NIAGMN_13360	0.81	-0.4
2,642,625	-	pyrE	NIAGMN_13360	0.81	-3.4
2,642,644	+	pyrE	NIAGMN_13360	0.84	-1.1
2,642,644	+	pyrE	NIAGMN_13360	0.84	-1.7
2,642,645	-	pyrE	NIAGMN_13360	0.84	-0.4
2,642,645	-	pyrE	NIAGMN_13360	0.84	-4.8
2,642,723	+				-0.3
2,642,744	+				-3.0
2,642,781	+				+1.4
2,642,781	+				-0.1
2,642,781	+				+0.2
2,642,781	+				-1.7
2,642,781	+				-2.4
2,642,781	+				-2.0
2,642,781	+				-2.1
2,642,781	+				+2.8
2,642,782	-				+2.7
2,642,782	-				+1.2
2,642,782	-				-0.9
2,642,782	-				-0.5
2,642,785	-				-0.1
2,642,805	-				+2.0
2,642,805	-				-1.6
2,642,845	+	slmA	NIAGMN_13365	0.10	-2.9
2,642,875	+	slmA	NIAGMN_13365	0.15	+0.9
2,642,875	+	slmA	NIAGMN_13365	0.15	-0.5
2,642,875	+	slmA	NIAGMN_13365	0.15	+0.6
2,642,875	+	slmA	NIAGMN_13365	0.15	-1.3
2,642,875	+	slmA	NIAGMN_13365	0.15	-2.3
2,642,875	+	slmA	NIAGMN_13365	0.15	-0.1
2,642,875	+	slmA	NIAGMN_13365	0.15	-1.0
2,642,876	-	slmA	NIAGMN_13365	0.16	-2.7
2,642,876	-	slmA	NIAGMN_13365	0.16	+3.6
2,642,876	-	slmA	NIAGMN_13365	0.16	+0.1
2,642,891	+	slmA	NIAGMN_13365	0.18	+0.2
2,642,892	-	slmA	NIAGMN_13365	0.18	+0.7
2,642,892	-	slmA	NIAGMN_13365	0.18	-2.7
2,642,928	+	slmA	NIAGMN_13365	0.24	+1.7
2,642,929	-	slmA	NIAGMN_13365	0.24	-1.5
2,642,963	+	slmA	NIAGMN_13365	0.30	-0.1
2,642,963	+	slmA	NIAGMN_13365	0.30	-0.5
2,642,964	-	slmA	NIAGMN_13365	0.30	-1.1
2,642,986	+	slmA	NIAGMN_13365	0.34	-1.2
2,643,076	+	slmA	NIAGMN_13365	0.49	+0.4
2,643,076	+	slmA	NIAGMN_13365	0.49	+0.4
2,643,076	+	slmA	NIAGMN_13365	0.49	-3.5
2,643,076	+	slmA	NIAGMN_13365	0.49	-0.3
2,643,076	+	slmA	NIAGMN_13365	0.49	+0.3
2,643,077	-	slmA	NIAGMN_13365	0.49	-0.1
2,643,077	-	slmA	NIAGMN_13365	0.49	-0.3
2,643,218	-	slmA	NIAGMN_13365	0.73	-1.7
2,643,234	+	slmA	NIAGMN_13365	0.76	-3.2
2,643,235	-	slmA	NIAGMN_13365	0.76	+0.7
2,643,235	-	slmA	NIAGMN_13365	0.76	+2.0
2,643,286	+	slmA	NIAGMN_13365	0.84	-1.8
2,643,286	+	slmA	NIAGMN_13365	0.84	-2.9
2,643,287	-	slmA	NIAGMN_13365	0.84	+0.2
2,643,287	-	slmA	NIAGMN_13365	0.84	+0.4
2,643,336	-				-2.9
2,643,382	+				+2.7
2,643,383	-				-2.0
2,643,383	-				+1.6
2,643,389	+				-1.9
2,643,390	-				+0.8
2,643,402	-				-0.3
2,643,402	-				-2.5
2,643,429	-				-1.7
2,643,455	+				-1.6
2,643,456	-				-0.4
2,643,456	-				-0.6
2,643,456	-				-1.4
2,643,460	+				-0.5
2,643,460	+				-0.8
2,643,460	+				+0.1
2,643,460	+				+1.0
2,643,461	-				+0.7
2,643,461	-				+0.9
2,643,461	-				-0.1
2,643,461	-				-0.6
2,643,480	+				+0.5
2,643,480	+				-0.2
2,643,480	+				-0.6
2,643,480	+				+0.5
2,643,480	+				-0.1
2,643,480	+				+2.7
2,643,480	+				-0.9
2,643,481	-				-2.6
2,643,481	-				-0.1
2,643,481	-				+1.5
2,643,481	-				-2.2
2,643,481	-				-0.6
2,643,481	-				+0.4
2,643,481	-				+1.6
2,643,481	-				+2.5
2,643,481	-				-2.8
2,643,481	-				-0.6
2,643,481	-				-3.1
2,643,487	+				+1.4
2,643,488	-				+0.3