Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11185

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoB_R687H and rplL are separated by 319 nucleotidesrplL and rplJ are separated by 66 nucleotidesrplJ and rplA are separated by 291 nucleotidesrplA and rplK are separated by 3 nucleotides NIAGMN_11170: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 2,207,555 to 2,211,583 _R687H NIAGMN_11180: rplL - 50S ribosomal protein L7/L12, at 2,211,903 to 2,212,268 rplL NIAGMN_11185: rplJ - 50S ribosomal protein L10, at 2,212,335 to 2,212,832 rplJ NIAGMN_11190: rplA - 50S ribosomal protein L1, at 2,213,124 to 2,213,828 rplA NIAGMN_11195: rplK - 50S ribosomal protein L11, at 2,213,832 to 2,214,260 rplK Position (kb) 2212 2213Strain fitness (log2 ratio) -2 -1 0 1at 2211.704 kb on - strandat 2211.755 kb on - strandat 2211.755 kb on - strandat 2211.755 kb on - strandat 2211.755 kb on - strandat 2213.078 kb on - strandat 2213.078 kb on - strandat 2213.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,211,704 - -1.5
2,211,755 - -1.1
2,211,755 - -0.7
2,211,755 - -1.9
2,211,755 - -2.6
2,213,078 - +0.5
2,213,078 - -2.4
2,213,117 - -1.8

Or see this region's nucleotide sequence