Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09825

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,934,393	+	ytfQ	NIAGMN_09820	0.32	+1.6
1,934,433	+	ytfQ	NIAGMN_09820	0.36	-3.1
1,934,460	+	ytfQ	NIAGMN_09820	0.39	+0.7
1,934,503	-	ytfQ	NIAGMN_09820	0.44	-0.7
1,934,517	+	ytfQ	NIAGMN_09820	0.45	+1.4
1,934,617	+	ytfQ	NIAGMN_09820	0.55	+2.0
1,934,617	+	ytfQ	NIAGMN_09820	0.55	-2.1
1,934,640	+	ytfQ	NIAGMN_09820	0.58	+1.8
1,934,641	-	ytfQ	NIAGMN_09820	0.58	-1.4
1,934,676	+	ytfQ	NIAGMN_09820	0.62	+1.2
1,934,677	-	ytfQ	NIAGMN_09820	0.62	+2.1
1,934,677	-	ytfQ	NIAGMN_09820	0.62	-0.5
1,934,677	-	ytfQ	NIAGMN_09820	0.62	+0.5
1,934,677	-	ytfQ	NIAGMN_09820	0.62	+0.3
1,934,677	-	ytfQ	NIAGMN_09820	0.62	+1.8
1,934,678	+	ytfQ	NIAGMN_09820	0.62	-2.9
1,934,678	+	ytfQ	NIAGMN_09820	0.62	-2.4
1,934,678	+	ytfQ	NIAGMN_09820	0.62	+1.4
1,934,756	-	ytfQ	NIAGMN_09820	0.70	+0.3
1,934,791	-	ytfQ	NIAGMN_09820	0.74	-1.2
1,934,828	-	ytfQ	NIAGMN_09820	0.78	-0.2
1,934,828	-	ytfQ	NIAGMN_09820	0.78	-3.2
1,934,880	+	ytfQ	NIAGMN_09820	0.83	-1.0
1,934,881	-	ytfQ	NIAGMN_09820	0.83	+0.9
1,934,992	-				-1.9
1,935,023	-				-1.8
1,935,029	-				-1.8
1,935,042	+				+0.7
1,935,063	-				+0.3
1,935,063	-				+1.8
1,935,067	-				-2.4
1,935,067	-				+2.5
1,935,069	+				-1.7
1,935,069	+				-1.0
1,935,099	-				+0.5
1,935,101	-				+0.9
1,935,109	-				-0.2
1,935,113	-				+2.9
1,935,129	+				-0.0
1,935,130	-				+0.5
1,935,130	-				+0.6
1,935,235	+				-2.3
1,935,305	+				-3.0
1,935,307	+				+0.7
1,935,307	+				+1.3
1,935,310	+				-1.1
1,935,310	+				-0.4
1,935,880	+				+2.3
1,935,880	+				+0.5
1,935,880	+				+0.1
1,935,880	+				+0.1
1,935,895	+				+2.9
1,935,963	+				+1.0
1,935,964	-				+0.3
1,935,986	+				+0.9
1,935,987	-				-2.5
1,935,987	-				-2.2
1,936,028	-	chpB	NIAGMN_09830	0.21	-1.7
1,936,049	+	chpB	NIAGMN_09830	0.28	-0.5
1,936,112	+	chpB	NIAGMN_09830	0.48	-1.0
1,936,113	-	chpB	NIAGMN_09830	0.48	+1.2
1,936,113	-	chpB	NIAGMN_09830	0.48	-2.0
1,936,113	-	chpB	NIAGMN_09830	0.48	-2.1
1,936,113	-	chpB	NIAGMN_09830	0.48	-0.6
1,936,193	-	chpB	NIAGMN_09830	0.73	+0.2
1,936,313	-				-2.7
1,936,360	-	chpS	NIAGMN_09835	0.21	+2.2
1,936,481	-	chpS	NIAGMN_09835	0.69	+1.6
1,936,481	-	chpS	NIAGMN_09835	0.69	-0.9
1,936,486	-	chpS	NIAGMN_09835	0.71	-0.6
1,936,498	+	chpS	NIAGMN_09835	0.76	+1.8
1,936,499	-	chpS	NIAGMN_09835	0.77	-2.8
1,936,499	-	chpS	NIAGMN_09835	0.77	+0.4
1,936,518	+	chpS	NIAGMN_09835	0.84	-1.8
1,936,518	+	chpS	NIAGMN_09835	0.84	-0.6
1,936,519	-	chpS	NIAGMN_09835	0.85	+1.1
1,936,548	+				-1.7
1,936,549	-				-1.2
1,936,549	-				+0.3
1,936,549	-				-0.3
1,936,551	+				-0.2
1,936,551	+				+0.8
1,936,551	+				-3.2
1,936,551	+				+0.7
1,936,552	-				+0.2
1,936,584	-				-0.1
1,936,613	-				-2.2
1,936,658	+				+0.8
1,936,658	+				+1.5
1,936,659	-				+2.0
1,936,659	-				+0.2
1,936,659	-				+0.0
1,936,659	-				-3.3
1,936,659	-				+0.2
1,936,662	+				-0.5
1,936,663	-				+0.1
1,936,663	-				+0.1
1,936,663	-				+0.9
1,936,663	-				+1.9
1,936,704	+				+0.7
1,936,758	+				-1.6
1,936,758	+				-0.9
1,936,759	-				-1.3
1,936,764	+				-0.7
1,936,765	-				-0.5
1,936,770	+				-1.6
1,936,770	+				-1.8
1,936,770	+				+0.0
1,936,771	-				-3.5
1,936,771	-				-2.5
1,936,771	-				+0.6
1,936,771	-				+3.6
1,936,771	-				-3.2
1,936,774	+				+0.7
1,936,774	+				+1.9
1,936,775	-				-2.1
1,936,812	-	ytfP	NIAGMN_09840	0.13	-1.0
1,936,812	-	ytfP	NIAGMN_09840	0.13	+1.6
1,936,812	-	ytfP	NIAGMN_09840	0.13	+0.8
1,936,839	+	ytfP	NIAGMN_09840	0.20	-2.2
1,936,840	-	ytfP	NIAGMN_09840	0.21	+1.5
1,936,840	-	ytfP	NIAGMN_09840	0.21	-1.4
1,936,840	-	ytfP	NIAGMN_09840	0.21	+1.4
1,936,840	-	ytfP	NIAGMN_09840	0.21	-1.0
1,936,840	-	ytfP	NIAGMN_09840	0.21	+1.5
1,936,840	-	ytfP	NIAGMN_09840	0.21	-2.8